Hb_000608_290

Information

Type -
Description -
Location Contig608: 141971-143932
Sequence    

Annotation

kegg
ID rcu:RCOM_1077810
description thioredoxin f-type, putative
nr
ID XP_002514830.1
description thioredoxin f-type, putative [Ricinus communis]
swissprot
ID Q9XFH9
description Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1
trembl
ID B9RM61
description Thioredoxin f-type, putative OS=Ricinus communis GN=RCOM_1077810 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin f- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50852: 142060-143851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_290 0.0 - - thioredoxin f-type, putative [Ricinus communis]
2 Hb_001051_010 0.0567082747 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
3 Hb_001248_070 0.0665609867 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
4 Hb_018591_020 0.0696405181 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
5 Hb_002407_090 0.0719841551 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
6 Hb_002073_150 0.0826056015 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
7 Hb_011104_020 0.0840668812 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
8 Hb_000140_460 0.0856001539 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
9 Hb_001321_010 0.0873619088 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
10 Hb_000373_010 0.087491786 - - ATP binding protein, putative [Ricinus communis]
11 Hb_025557_060 0.0888358609 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
12 Hb_007718_030 0.0919188295 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_000270_090 0.0947629533 - - nitrate transporter, putative [Ricinus communis]
14 Hb_000270_640 0.0950500361 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
15 Hb_001629_120 0.0983661067 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
16 Hb_000627_050 0.0986061582 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
17 Hb_000002_500 0.099347773 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
18 Hb_004835_020 0.0993736848 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
19 Hb_002007_220 0.0995269869 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
20 Hb_000046_120 0.1006719485 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000608_290 Hb_000608_290 Hb_001051_010 Hb_001051_010 Hb_000608_290--Hb_001051_010 Hb_001248_070 Hb_001248_070 Hb_000608_290--Hb_001248_070 Hb_018591_020 Hb_018591_020 Hb_000608_290--Hb_018591_020 Hb_002407_090 Hb_002407_090 Hb_000608_290--Hb_002407_090 Hb_002073_150 Hb_002073_150 Hb_000608_290--Hb_002073_150 Hb_011104_020 Hb_011104_020 Hb_000608_290--Hb_011104_020 Hb_001051_010--Hb_018591_020 Hb_000627_050 Hb_000627_050 Hb_001051_010--Hb_000627_050 Hb_000023_130 Hb_000023_130 Hb_001051_010--Hb_000023_130 Hb_001051_010--Hb_002073_150 Hb_000140_460 Hb_000140_460 Hb_001051_010--Hb_000140_460 Hb_001248_070--Hb_002073_150 Hb_000705_040 Hb_000705_040 Hb_001248_070--Hb_000705_040 Hb_001248_070--Hb_011104_020 Hb_069696_020 Hb_069696_020 Hb_001248_070--Hb_069696_020 Hb_131876_010 Hb_131876_010 Hb_001248_070--Hb_131876_010 Hb_002007_220 Hb_002007_220 Hb_018591_020--Hb_002007_220 Hb_000046_120 Hb_000046_120 Hb_018591_020--Hb_000046_120 Hb_033363_040 Hb_033363_040 Hb_018591_020--Hb_033363_040 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000002_500 Hb_000002_500 Hb_018591_020--Hb_000002_500 Hb_046739_010 Hb_046739_010 Hb_002407_090--Hb_046739_010 Hb_011028_030 Hb_011028_030 Hb_002407_090--Hb_011028_030 Hb_002407_090--Hb_011104_020 Hb_000270_090 Hb_000270_090 Hb_002407_090--Hb_000270_090 Hb_000373_010 Hb_000373_010 Hb_002407_090--Hb_000373_010 Hb_002073_150--Hb_011104_020 Hb_012389_010 Hb_012389_010 Hb_002073_150--Hb_012389_010 Hb_002073_150--Hb_131876_010 Hb_000483_430 Hb_000483_430 Hb_002073_150--Hb_000483_430 Hb_002073_150--Hb_069696_020 Hb_011104_020--Hb_000483_430 Hb_001321_010 Hb_001321_010 Hb_011104_020--Hb_001321_010 Hb_011104_020--Hb_000270_090 Hb_004994_030 Hb_004994_030 Hb_011104_020--Hb_004994_030 Hb_011104_020--Hb_012389_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.387153 39.3537 103.665 70.8348 0.0787879 0.189045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.330835 1.07803 0.137335 12.5856 157.88

CAGE analysis