Hb_002871_110

Information

Type transcription factor
Description TF Family: ARF
Location Contig2871: 153821-159537
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12980g
description POPTRDRAFT_899131; hypothetical protein
nr
ID XP_002320368.2
description hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
swissprot
ID A2YG67
description Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=3 SV=1
trembl
ID B9I9X2
description Auxin response factor OS=Populus trichocarpa GN=POPTR_0014s12980g PE=3 SV=2
Gene Ontology
ID GO:0006355
description auxin response factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29946: 154712-155233 , PASA_asmbl_29947: 158638-159349 , PASA_asmbl_29948: 158782-159487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002871_110 0.0 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
2 Hb_006970_170 0.0660488286 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_000010_370 0.0790489201 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
4 Hb_000500_230 0.0875749641 - - hypothetical protein RCOM_0634810 [Ricinus communis]
5 Hb_000025_590 0.0911313006 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
6 Hb_000694_050 0.0990275516 - - Nuclease PA3, putative [Ricinus communis]
7 Hb_007894_120 0.1006687862 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
8 Hb_119066_010 0.104098072 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
9 Hb_003849_030 0.10941781 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
10 Hb_001883_010 0.111075701 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
11 Hb_000260_480 0.1110768683 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
12 Hb_005999_020 0.1136273731 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
13 Hb_032695_010 0.1180200004 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
14 Hb_001579_060 0.1212643594 - - carbonic anhydrase, putative [Ricinus communis]
15 Hb_000941_090 0.1218400976 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
16 Hb_017491_010 0.1227483467 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
17 Hb_000215_290 0.1254524222 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
18 Hb_007747_100 0.1255111008 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
19 Hb_044653_050 0.1258835992 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
20 Hb_006478_050 0.1265434903 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002871_110 Hb_002871_110 Hb_006970_170 Hb_006970_170 Hb_002871_110--Hb_006970_170 Hb_000010_370 Hb_000010_370 Hb_002871_110--Hb_000010_370 Hb_000500_230 Hb_000500_230 Hb_002871_110--Hb_000500_230 Hb_000025_590 Hb_000025_590 Hb_002871_110--Hb_000025_590 Hb_000694_050 Hb_000694_050 Hb_002871_110--Hb_000694_050 Hb_007894_120 Hb_007894_120 Hb_002871_110--Hb_007894_120 Hb_006970_170--Hb_000500_230 Hb_006970_170--Hb_007894_120 Hb_006970_170--Hb_000010_370 Hb_030982_050 Hb_030982_050 Hb_006970_170--Hb_030982_050 Hb_003849_030 Hb_003849_030 Hb_006970_170--Hb_003849_030 Hb_000010_370--Hb_000025_590 Hb_000010_370--Hb_000500_230 Hb_000260_480 Hb_000260_480 Hb_000010_370--Hb_000260_480 Hb_000010_370--Hb_007894_120 Hb_000500_230--Hb_000260_480 Hb_000500_230--Hb_007894_120 Hb_017491_010 Hb_017491_010 Hb_000500_230--Hb_017491_010 Hb_032695_010 Hb_032695_010 Hb_000025_590--Hb_032695_010 Hb_000215_290 Hb_000215_290 Hb_000025_590--Hb_000215_290 Hb_000025_590--Hb_006970_170 Hb_032779_010 Hb_032779_010 Hb_000025_590--Hb_032779_010 Hb_001579_060 Hb_001579_060 Hb_000694_050--Hb_001579_060 Hb_001883_010 Hb_001883_010 Hb_000694_050--Hb_001883_010 Hb_000987_020 Hb_000987_020 Hb_000694_050--Hb_000987_020 Hb_002601_140 Hb_002601_140 Hb_000694_050--Hb_002601_140 Hb_002078_320 Hb_002078_320 Hb_000694_050--Hb_002078_320 Hb_007894_120--Hb_017491_010 Hb_044653_050 Hb_044653_050 Hb_007894_120--Hb_044653_050 Hb_007894_120--Hb_000260_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.1344 2.70212 1.96435 0 0.0671375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.027383 0 0.0406439 1.04761 3.03338

CAGE analysis