Hb_003849_030

Information

Type -
Description -
Location Contig3849: 15958-22039
Sequence    

Annotation

kegg
ID eus:EUTSA_v10003650mg
description hypothetical protein
nr
ID KFK33564.1
description hypothetical protein AALP_AA5G029900 [Arabis alpina]
swissprot
ID Q9LVD2
description Cytochrome P450 71B10 OS=Arabidopsis thaliana GN=CYP71B10 PE=3 SV=1
trembl
ID A0A087GUL2
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G029900 PE=4 SV=1
Gene Ontology
ID GO:0005506
description cytochrome family subfamily polypeptide

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38736: 18901-21049 , PASA_asmbl_38738: 16243-19549
cDNA
(Sanger)
(ID:Location)		 040_D03.ab1: 20095-20928

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_030 0.0 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
2 Hb_002849_120 0.0762409832 - - ferric reductase oxidase [Manihot esculenta]
3 Hb_001160_020 0.0776277679 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
4 Hb_000046_430 0.0780455882 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
5 Hb_006970_170 0.0921893527 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_007113_020 0.0948020092 - - -
7 Hb_001153_090 0.1012481208 - - PREDICTED: protein FAM63A [Jatropha curcas]
8 Hb_000010_370 0.1057968463 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
9 Hb_000025_590 0.1059649241 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
10 Hb_007747_100 0.1075715811 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
11 Hb_003387_080 0.1090396518 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_002871_110 0.10941781 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
13 Hb_000500_230 0.1094526981 - - hypothetical protein RCOM_0634810 [Ricinus communis]
14 Hb_093364_010 0.1100992754 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
15 Hb_005016_080 0.1107175696 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
16 Hb_005496_170 0.1111107985 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
17 Hb_002361_010 0.1118549529 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_000694_050 0.1126564233 - - Nuclease PA3, putative [Ricinus communis]
19 Hb_007483_080 0.1177391341 - - hypothetical protein RCOM_0634810 [Ricinus communis]
20 Hb_002010_100 0.121354711 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]

Gene co-expression network

sample Hb_003849_030 Hb_003849_030 Hb_002849_120 Hb_002849_120 Hb_003849_030--Hb_002849_120 Hb_001160_020 Hb_001160_020 Hb_003849_030--Hb_001160_020 Hb_000046_430 Hb_000046_430 Hb_003849_030--Hb_000046_430 Hb_006970_170 Hb_006970_170 Hb_003849_030--Hb_006970_170 Hb_007113_020 Hb_007113_020 Hb_003849_030--Hb_007113_020 Hb_001153_090 Hb_001153_090 Hb_003849_030--Hb_001153_090 Hb_033153_040 Hb_033153_040 Hb_002849_120--Hb_033153_040 Hb_002849_120--Hb_001153_090 Hb_000680_020 Hb_000680_020 Hb_002849_120--Hb_000680_020 Hb_002849_120--Hb_001160_020 Hb_127661_010 Hb_127661_010 Hb_002849_120--Hb_127661_010 Hb_007747_100 Hb_007747_100 Hb_001160_020--Hb_007747_100 Hb_001160_020--Hb_001153_090 Hb_000318_050 Hb_000318_050 Hb_001160_020--Hb_000318_050 Hb_023344_130 Hb_023344_130 Hb_001160_020--Hb_023344_130 Hb_000189_160 Hb_000189_160 Hb_000046_430--Hb_000189_160 Hb_003224_010 Hb_003224_010 Hb_000046_430--Hb_003224_010 Hb_000689_010 Hb_000689_010 Hb_000046_430--Hb_000689_010 Hb_030982_050 Hb_030982_050 Hb_000046_430--Hb_030982_050 Hb_004611_050 Hb_004611_050 Hb_000046_430--Hb_004611_050 Hb_002871_110 Hb_002871_110 Hb_006970_170--Hb_002871_110 Hb_000500_230 Hb_000500_230 Hb_006970_170--Hb_000500_230 Hb_007894_120 Hb_007894_120 Hb_006970_170--Hb_007894_120 Hb_000010_370 Hb_000010_370 Hb_006970_170--Hb_000010_370 Hb_006970_170--Hb_030982_050 Hb_000261_370 Hb_000261_370 Hb_007113_020--Hb_000261_370 Hb_001501_020 Hb_001501_020 Hb_007113_020--Hb_001501_020 Hb_006827_030 Hb_006827_030 Hb_007113_020--Hb_006827_030 Hb_171168_010 Hb_171168_010 Hb_007113_020--Hb_171168_010 Hb_007113_020--Hb_127661_010 Hb_006269_010 Hb_006269_010 Hb_001153_090--Hb_006269_010 Hb_001153_090--Hb_007747_100 Hb_001153_090--Hb_023344_130 Hb_003077_140 Hb_003077_140 Hb_001153_090--Hb_003077_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0886899 15.2398 18.7404 9.0565 0.0764242 0.0898325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11556 0.0303131 0.0193639 10.157 17.1299

CAGE analysis