Hb_003077_140

Information

Type -
Description -
Location Contig3077: 198349-199875
Sequence    

Annotation

kegg
ID egr:104455246
description putative UPF0481 protein At3g02645
nr
ID KDP44461.1
description hypothetical protein JCGZ_16294 [Jatropha curcas]
swissprot
ID P0C897
description Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1
trembl
ID A0A067L7M1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16294 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32500: 198361-198919 , PASA_asmbl_32502: 199011-199849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003077_140 0.0 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
2 Hb_000767_010 0.0880446683 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
3 Hb_001153_090 0.0882648715 - - PREDICTED: protein FAM63A [Jatropha curcas]
4 Hb_033153_040 0.0894949098 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_123560_050 0.0924958951 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
6 Hb_001357_360 0.0945978735 - - zinc finger protein, putative [Ricinus communis]
7 Hb_002818_070 0.0955488464 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_026144_030 0.0985569625 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
9 Hb_000614_190 0.0993268996 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
10 Hb_000680_020 0.102291163 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_114310_050 0.1041484943 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
12 Hb_002849_120 0.1062080264 - - ferric reductase oxidase [Manihot esculenta]
13 Hb_001819_010 0.1092484861 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
14 Hb_004785_200 0.1113325594 - - PREDICTED: protein MKS1 [Jatropha curcas]
15 Hb_001836_010 0.1121490172 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
16 Hb_004007_230 0.1139358222 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
17 Hb_007420_020 0.1146208938 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_010880_010 0.1196595114 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
19 Hb_000009_390 0.121396965 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
20 Hb_003683_200 0.1215274126 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_003077_140 Hb_003077_140 Hb_000767_010 Hb_000767_010 Hb_003077_140--Hb_000767_010 Hb_001153_090 Hb_001153_090 Hb_003077_140--Hb_001153_090 Hb_033153_040 Hb_033153_040 Hb_003077_140--Hb_033153_040 Hb_123560_050 Hb_123560_050 Hb_003077_140--Hb_123560_050 Hb_001357_360 Hb_001357_360 Hb_003077_140--Hb_001357_360 Hb_002818_070 Hb_002818_070 Hb_003077_140--Hb_002818_070 Hb_026144_030 Hb_026144_030 Hb_000767_010--Hb_026144_030 Hb_000767_010--Hb_001357_360 Hb_028872_100 Hb_028872_100 Hb_000767_010--Hb_028872_100 Hb_008111_010 Hb_008111_010 Hb_000767_010--Hb_008111_010 Hb_004007_230 Hb_004007_230 Hb_000767_010--Hb_004007_230 Hb_006269_010 Hb_006269_010 Hb_001153_090--Hb_006269_010 Hb_002849_120 Hb_002849_120 Hb_001153_090--Hb_002849_120 Hb_007747_100 Hb_007747_100 Hb_001153_090--Hb_007747_100 Hb_023344_130 Hb_023344_130 Hb_001153_090--Hb_023344_130 Hb_001160_020 Hb_001160_020 Hb_001153_090--Hb_001160_020 Hb_033153_040--Hb_002849_120 Hb_005569_030 Hb_005569_030 Hb_033153_040--Hb_005569_030 Hb_000680_020 Hb_000680_020 Hb_033153_040--Hb_000680_020 Hb_000313_100 Hb_000313_100 Hb_033153_040--Hb_000313_100 Hb_033153_040--Hb_001153_090 Hb_001819_010 Hb_001819_010 Hb_123560_050--Hb_001819_010 Hb_000377_160 Hb_000377_160 Hb_123560_050--Hb_000377_160 Hb_029866_110 Hb_029866_110 Hb_123560_050--Hb_029866_110 Hb_007420_020 Hb_007420_020 Hb_123560_050--Hb_007420_020 Hb_123560_050--Hb_026144_030 Hb_001971_020 Hb_001971_020 Hb_001357_360--Hb_001971_020 Hb_005470_040 Hb_005470_040 Hb_001357_360--Hb_005470_040 Hb_001357_360--Hb_123560_050 Hb_001357_360--Hb_004007_230 Hb_001836_010 Hb_001836_010 Hb_002818_070--Hb_001836_010 Hb_000009_390 Hb_000009_390 Hb_002818_070--Hb_000009_390 Hb_000331_220 Hb_000331_220 Hb_002818_070--Hb_000331_220 Hb_071130_020 Hb_071130_020 Hb_002818_070--Hb_071130_020 Hb_002818_070--Hb_000680_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0268645 9.64314 4.35257 4.32747 0.0125792 0.0520303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.030595 0.0240701 0 5.81134 9.92747

CAGE analysis