Hb_004007_230

Information

Type -
Description -
Location Contig4007: 219174-222407
Sequence    

Annotation

kegg
ID tcc:TCM_000770
description Acetamidase/Formamidase family protein isoform 1
nr
ID XP_012079384.1
description PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
swissprot
ID Q50228
description Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1
trembl
ID A0A061DIH3
description Acetamidase/Formamidase family protein isoform 1 OS=Theobroma cacao GN=TCM_000770 PE=4 SV=1
Gene Ontology
ID GO:0004328
description formamidase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39883: 219136-222370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_230 0.0 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
2 Hb_026053_030 0.1037116108 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
3 Hb_001357_360 0.109728686 - - zinc finger protein, putative [Ricinus communis]
4 Hb_004143_140 0.1113816419 - - glycosyltransferase, partial [Arabidopsis thaliana]
5 Hb_000044_050 0.1137156139 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
6 Hb_003077_140 0.1139358222 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
7 Hb_000767_010 0.1161663508 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
8 Hb_000417_150 0.1174745909 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
9 Hb_002045_220 0.1223710645 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
10 Hb_000363_050 0.1276097854 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
11 Hb_033153_040 0.1336404311 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_002818_070 0.1337177343 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_003517_090 0.1360552936 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
14 Hb_027337_030 0.1402000957 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
15 Hb_001971_020 0.1418928763 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
16 Hb_005470_040 0.1437575241 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
17 Hb_000377_160 0.1447225325 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
18 Hb_004605_020 0.1454720292 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
19 Hb_011344_140 0.1463762486 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
20 Hb_004767_060 0.1465183797 - - PREDICTED: uncharacterized protein LOC105761928 [Gossypium raimondii]

Gene co-expression network

sample Hb_004007_230 Hb_004007_230 Hb_026053_030 Hb_026053_030 Hb_004007_230--Hb_026053_030 Hb_001357_360 Hb_001357_360 Hb_004007_230--Hb_001357_360 Hb_004143_140 Hb_004143_140 Hb_004007_230--Hb_004143_140 Hb_000044_050 Hb_000044_050 Hb_004007_230--Hb_000044_050 Hb_003077_140 Hb_003077_140 Hb_004007_230--Hb_003077_140 Hb_000767_010 Hb_000767_010 Hb_004007_230--Hb_000767_010 Hb_000417_150 Hb_000417_150 Hb_026053_030--Hb_000417_150 Hb_026053_030--Hb_000044_050 Hb_031949_010 Hb_031949_010 Hb_026053_030--Hb_031949_010 Hb_011344_140 Hb_011344_140 Hb_026053_030--Hb_011344_140 Hb_001907_020 Hb_001907_020 Hb_026053_030--Hb_001907_020 Hb_001971_020 Hb_001971_020 Hb_001357_360--Hb_001971_020 Hb_001357_360--Hb_003077_140 Hb_001357_360--Hb_000767_010 Hb_005470_040 Hb_005470_040 Hb_001357_360--Hb_005470_040 Hb_123560_050 Hb_123560_050 Hb_001357_360--Hb_123560_050 Hb_001989_080 Hb_001989_080 Hb_004143_140--Hb_001989_080 Hb_175670_010 Hb_175670_010 Hb_004143_140--Hb_175670_010 Hb_001046_040 Hb_001046_040 Hb_004143_140--Hb_001046_040 Hb_044624_010 Hb_044624_010 Hb_004143_140--Hb_044624_010 Hb_027474_010 Hb_027474_010 Hb_004143_140--Hb_027474_010 Hb_005271_180 Hb_005271_180 Hb_004143_140--Hb_005271_180 Hb_008195_020 Hb_008195_020 Hb_000044_050--Hb_008195_020 Hb_000044_050--Hb_001989_080 Hb_000044_050--Hb_000417_150 Hb_000044_050--Hb_004143_140 Hb_003077_140--Hb_000767_010 Hb_001153_090 Hb_001153_090 Hb_003077_140--Hb_001153_090 Hb_033153_040 Hb_033153_040 Hb_003077_140--Hb_033153_040 Hb_003077_140--Hb_123560_050 Hb_002818_070 Hb_002818_070 Hb_003077_140--Hb_002818_070 Hb_026144_030 Hb_026144_030 Hb_000767_010--Hb_026144_030 Hb_028872_100 Hb_028872_100 Hb_000767_010--Hb_028872_100 Hb_008111_010 Hb_008111_010 Hb_000767_010--Hb_008111_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.329507 110.522 23.7515 30.8283 0.553188 0.340208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23039 0.743373 0.196825 39.3185 90.3787

CAGE analysis