Hb_005271_180

Information

Type -
Description -
Location Contig5271: 120116-123397
Sequence    

Annotation

kegg
ID rcu:RCOM_1686080
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.11.30 1.3.1.74)
nr
ID XP_002509763.1
description Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
swissprot
ID Q9C7S5
description Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1
trembl
ID B9RC79
description Leucine-rich repeat receptor protein kinase EXS, putative OS=Ricinus communis GN=RCOM_1686080 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tyrosine-sulfated glycopeptide receptor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47064: 120060-121133 , PASA_asmbl_47065: 121313-121641 , PASA_asmbl_47066: 122140-122270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_180 0.0 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
2 Hb_007007_090 0.1094133936 - - phospholipase d beta, putative [Ricinus communis]
3 Hb_004143_140 0.1112707139 - - glycosyltransferase, partial [Arabidopsis thaliana]
4 Hb_005074_010 0.1164314648 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
5 Hb_001046_040 0.1166861128 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_044624_010 0.1176570461 - - -
7 Hb_000363_250 0.117922385 - - PREDICTED: pirin-like protein [Malus domestica]
8 Hb_001951_230 0.1200268105 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
9 Hb_001013_050 0.1200555979 - - unnamed protein product [Coffea canephora]
10 Hb_002375_080 0.1210663946 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004324_220 0.1264453459 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
12 Hb_003562_040 0.1275507735 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
13 Hb_002809_120 0.1286925248 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
14 Hb_001269_530 0.1324732741 - - ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_175670_010 0.1332601616 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_001269_240 0.1337415256 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
17 Hb_002335_010 0.1366047568 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
18 Hb_000813_090 0.1368571108 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
19 Hb_004907_070 0.1372439591 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
20 Hb_000589_330 0.1373763164 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005271_180 Hb_005271_180 Hb_007007_090 Hb_007007_090 Hb_005271_180--Hb_007007_090 Hb_004143_140 Hb_004143_140 Hb_005271_180--Hb_004143_140 Hb_005074_010 Hb_005074_010 Hb_005271_180--Hb_005074_010 Hb_001046_040 Hb_001046_040 Hb_005271_180--Hb_001046_040 Hb_044624_010 Hb_044624_010 Hb_005271_180--Hb_044624_010 Hb_000363_250 Hb_000363_250 Hb_005271_180--Hb_000363_250 Hb_002375_080 Hb_002375_080 Hb_007007_090--Hb_002375_080 Hb_001248_170 Hb_001248_170 Hb_007007_090--Hb_001248_170 Hb_001677_120 Hb_001677_120 Hb_007007_090--Hb_001677_120 Hb_000589_330 Hb_000589_330 Hb_007007_090--Hb_000589_330 Hb_006573_280 Hb_006573_280 Hb_007007_090--Hb_006573_280 Hb_003562_040 Hb_003562_040 Hb_007007_090--Hb_003562_040 Hb_001989_080 Hb_001989_080 Hb_004143_140--Hb_001989_080 Hb_175670_010 Hb_175670_010 Hb_004143_140--Hb_175670_010 Hb_004143_140--Hb_001046_040 Hb_004143_140--Hb_044624_010 Hb_027474_010 Hb_027474_010 Hb_004143_140--Hb_027474_010 Hb_005074_010--Hb_003562_040 Hb_001913_030 Hb_001913_030 Hb_005074_010--Hb_001913_030 Hb_002335_010 Hb_002335_010 Hb_005074_010--Hb_002335_010 Hb_007257_070 Hb_007257_070 Hb_005074_010--Hb_007257_070 Hb_028928_020 Hb_028928_020 Hb_005074_010--Hb_028928_020 Hb_005074_010--Hb_007007_090 Hb_001046_040--Hb_044624_010 Hb_000813_090 Hb_000813_090 Hb_001046_040--Hb_000813_090 Hb_115114_010 Hb_115114_010 Hb_001046_040--Hb_115114_010 Hb_004324_220 Hb_004324_220 Hb_001046_040--Hb_004324_220 Hb_001046_040--Hb_175670_010 Hb_044624_010--Hb_004324_220 Hb_022487_010 Hb_022487_010 Hb_044624_010--Hb_022487_010 Hb_044624_010--Hb_175670_010 Hb_044624_010--Hb_115114_010 Hb_044624_010--Hb_000813_090 Hb_000659_040 Hb_000659_040 Hb_000363_250--Hb_000659_040 Hb_000215_290 Hb_000215_290 Hb_000363_250--Hb_000215_290 Hb_144703_010 Hb_144703_010 Hb_000363_250--Hb_144703_010 Hb_001951_230 Hb_001951_230 Hb_000363_250--Hb_001951_230 Hb_000613_250 Hb_000613_250 Hb_000363_250--Hb_000613_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0636951 6.17316 1.84086 3.89041 0.0617859 0.0524969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0395689 0.0103794 0.119301 1.08217 4.23643

CAGE analysis