Hb_007257_070

Information

Type -
Description -
Location Contig7257: 73397-74794
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23930g
description POPTRDRAFT_763199; hypothetical protein
nr
ID XP_012077219.1
description PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KD31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07618 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55847: 73059-73286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007257_070 0.0 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
2 Hb_000574_230 0.0585491282 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
3 Hb_001269_240 0.062442442 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
4 Hb_026050_010 0.0879439403 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_005074_010 0.0986263685 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
6 Hb_028928_020 0.1016817757 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
7 Hb_003071_050 0.1059896293 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
8 Hb_007221_040 0.1067828488 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
9 Hb_000427_040 0.1087452698 - - Gibberellin receptor GID1, putative [Ricinus communis]
10 Hb_003581_050 0.1089523184 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
11 Hb_000434_060 0.112031039 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
12 Hb_005051_010 0.1195251931 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
13 Hb_032779_010 0.1211768591 - - unnamed protein product [Vitis vinifera]
14 Hb_007441_360 0.1219685755 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
15 Hb_017491_010 0.1252570273 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
16 Hb_000260_480 0.1257484308 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
17 Hb_009771_040 0.127387362 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
18 Hb_002205_150 0.1279302339 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
19 Hb_144703_010 0.1283120655 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
20 Hb_009557_080 0.1287116911 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]

Gene co-expression network

sample Hb_007257_070 Hb_007257_070 Hb_000574_230 Hb_000574_230 Hb_007257_070--Hb_000574_230 Hb_001269_240 Hb_001269_240 Hb_007257_070--Hb_001269_240 Hb_026050_010 Hb_026050_010 Hb_007257_070--Hb_026050_010 Hb_005074_010 Hb_005074_010 Hb_007257_070--Hb_005074_010 Hb_028928_020 Hb_028928_020 Hb_007257_070--Hb_028928_020 Hb_003071_050 Hb_003071_050 Hb_007257_070--Hb_003071_050 Hb_000574_230--Hb_001269_240 Hb_000574_230--Hb_026050_010 Hb_002725_080 Hb_002725_080 Hb_000574_230--Hb_002725_080 Hb_024650_010 Hb_024650_010 Hb_000574_230--Hb_024650_010 Hb_007221_040 Hb_007221_040 Hb_000574_230--Hb_007221_040 Hb_001269_240--Hb_026050_010 Hb_009557_080 Hb_009557_080 Hb_001269_240--Hb_009557_080 Hb_007441_360 Hb_007441_360 Hb_001269_240--Hb_007441_360 Hb_001269_240--Hb_005074_010 Hb_009771_040 Hb_009771_040 Hb_026050_010--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_026050_010--Hb_002250_140 Hb_010174_200 Hb_010174_200 Hb_026050_010--Hb_010174_200 Hb_000258_230 Hb_000258_230 Hb_026050_010--Hb_000258_230 Hb_003562_040 Hb_003562_040 Hb_005074_010--Hb_003562_040 Hb_001913_030 Hb_001913_030 Hb_005074_010--Hb_001913_030 Hb_002335_010 Hb_002335_010 Hb_005074_010--Hb_002335_010 Hb_005074_010--Hb_028928_020 Hb_007007_090 Hb_007007_090 Hb_005074_010--Hb_007007_090 Hb_033187_020 Hb_033187_020 Hb_028928_020--Hb_033187_020 Hb_002097_130 Hb_002097_130 Hb_028928_020--Hb_002097_130 Hb_006736_040 Hb_006736_040 Hb_028928_020--Hb_006736_040 Hb_000054_140 Hb_000054_140 Hb_028928_020--Hb_000054_140 Hb_028928_020--Hb_024650_010 Hb_017491_010 Hb_017491_010 Hb_003071_050--Hb_017491_010 Hb_000260_410 Hb_000260_410 Hb_003071_050--Hb_000260_410 Hb_003071_050--Hb_007221_040 Hb_003071_050--Hb_001269_240 Hb_044653_050 Hb_044653_050 Hb_003071_050--Hb_044653_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.26666 1.64915 2.47232 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0266544 0 0.372755 2.00127

CAGE analysis