Hb_033187_020

Information

Type -
Description -
Location Contig33187: 41166-52763
Sequence    

Annotation

kegg
ID cam:101500941
description uncharacterized LOC101500941
nr
ID XP_006283220.1
description hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
swissprot
ID O31581
description AB hydrolase superfamily protein YfhM OS=Bacillus subtilis (strain 168) GN=yfhM PE=3 SV=1
trembl
ID M0SHC8
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0005777
description bifunctional epoxide hydrolase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34883: 46863-47794 , PASA_asmbl_34884: 47822-48004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033187_020 0.0 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
2 Hb_028928_020 0.0675148881 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
3 Hb_000054_140 0.0937474022 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
4 Hb_002097_130 0.0975898202 - - tonoplast intrinsic protein [Hevea brasiliensis]
5 Hb_006736_040 0.1002094503 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
6 Hb_000365_180 0.1047508933 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
7 Hb_024650_010 0.1049797789 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
8 Hb_004837_110 0.1102091599 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
9 Hb_001989_070 0.1154034247 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
10 Hb_000032_090 0.1190502678 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000589_330 0.1192709916 - - kinase, putative [Ricinus communis]
12 Hb_001198_160 0.1207125653 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
13 Hb_003435_040 0.120721517 - - tonoplast intrinsic protein [Hevea brasiliensis]
14 Hb_006573_280 0.1214435416 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
15 Hb_003849_200 0.1231719165 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
16 Hb_001254_020 0.1241606687 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
17 Hb_000260_480 0.1256912074 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
18 Hb_001013_080 0.126990985 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
19 Hb_142026_010 0.1270292881 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
20 Hb_002375_080 0.1280260902 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_033187_020 Hb_033187_020 Hb_028928_020 Hb_028928_020 Hb_033187_020--Hb_028928_020 Hb_000054_140 Hb_000054_140 Hb_033187_020--Hb_000054_140 Hb_002097_130 Hb_002097_130 Hb_033187_020--Hb_002097_130 Hb_006736_040 Hb_006736_040 Hb_033187_020--Hb_006736_040 Hb_000365_180 Hb_000365_180 Hb_033187_020--Hb_000365_180 Hb_024650_010 Hb_024650_010 Hb_033187_020--Hb_024650_010 Hb_028928_020--Hb_002097_130 Hb_005074_010 Hb_005074_010 Hb_028928_020--Hb_005074_010 Hb_028928_020--Hb_006736_040 Hb_028928_020--Hb_000054_140 Hb_028928_020--Hb_024650_010 Hb_002370_060 Hb_002370_060 Hb_000054_140--Hb_002370_060 Hb_006573_280 Hb_006573_280 Hb_000054_140--Hb_006573_280 Hb_004837_110 Hb_004837_110 Hb_000054_140--Hb_004837_110 Hb_001198_160 Hb_001198_160 Hb_000054_140--Hb_001198_160 Hb_000836_220 Hb_000836_220 Hb_000054_140--Hb_000836_220 Hb_000589_330 Hb_000589_330 Hb_002097_130--Hb_000589_330 Hb_003849_200 Hb_003849_200 Hb_002097_130--Hb_003849_200 Hb_003435_040 Hb_003435_040 Hb_002097_130--Hb_003435_040 Hb_001013_050 Hb_001013_050 Hb_002097_130--Hb_001013_050 Hb_006736_040--Hb_024650_010 Hb_006736_040--Hb_003435_040 Hb_000028_330 Hb_000028_330 Hb_006736_040--Hb_000028_330 Hb_001610_070 Hb_001610_070 Hb_006736_040--Hb_001610_070 Hb_001013_080 Hb_001013_080 Hb_006736_040--Hb_001013_080 Hb_001518_030 Hb_001518_030 Hb_006736_040--Hb_001518_030 Hb_009476_070 Hb_009476_070 Hb_000365_180--Hb_009476_070 Hb_000163_180 Hb_000163_180 Hb_000365_180--Hb_000163_180 Hb_001989_070 Hb_001989_070 Hb_000365_180--Hb_001989_070 Hb_008749_010 Hb_008749_010 Hb_000365_180--Hb_008749_010 Hb_002010_100 Hb_002010_100 Hb_000365_180--Hb_002010_100 Hb_024650_010--Hb_003435_040 Hb_024650_010--Hb_001518_030 Hb_026048_030 Hb_026048_030 Hb_024650_010--Hb_026048_030 Hb_024650_010--Hb_000028_330 Hb_002725_080 Hb_002725_080 Hb_024650_010--Hb_002725_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00719127 0.361446 0.257938 0.303462 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0866252 0.164001

CAGE analysis