Hb_008749_010

Information

Type -
Description -
Location Contig8749: 5919-9600
Sequence    

Annotation

kegg
ID rcu:RCOM_0843030
description Auxin efflux carrier component, putative
nr
ID XP_012072212.1
description PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
swissprot
ID Q9S7Z8
description Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1
trembl
ID A0A067L1S2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04692 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin efflux carrier component 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61236: 5912-9780
cDNA
(Sanger)
(ID:Location)		 034_F10.ab1: 7719-9294

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008749_010 0.0 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
2 Hb_000365_180 0.0793886534 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
3 Hb_003747_250 0.087991307 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
4 Hb_000878_090 0.0895128666 - - sucrose-phosphatase family protein [Populus trichocarpa]
5 Hb_000163_180 0.095307444 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
6 Hb_004228_070 0.1007898175 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
7 Hb_001989_070 0.1028473801 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
8 Hb_000199_040 0.1041299357 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_009476_070 0.110939485 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
10 Hb_009907_020 0.1130513337 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
11 Hb_004117_280 0.1161009834 - - hypothetical protein JCGZ_00361 [Jatropha curcas]
12 Hb_007894_120 0.1165410577 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
13 Hb_002490_060 0.1175192273 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
14 Hb_002205_150 0.1188656149 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
15 Hb_008406_070 0.1195512942 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
16 Hb_142026_010 0.121594637 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
17 Hb_044653_050 0.121810339 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
18 Hb_008806_040 0.1233639276 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
19 Hb_138086_010 0.1233811556 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
20 Hb_007130_020 0.1255486298 - - -

Gene co-expression network

sample Hb_008749_010 Hb_008749_010 Hb_000365_180 Hb_000365_180 Hb_008749_010--Hb_000365_180 Hb_003747_250 Hb_003747_250 Hb_008749_010--Hb_003747_250 Hb_000878_090 Hb_000878_090 Hb_008749_010--Hb_000878_090 Hb_000163_180 Hb_000163_180 Hb_008749_010--Hb_000163_180 Hb_004228_070 Hb_004228_070 Hb_008749_010--Hb_004228_070 Hb_001989_070 Hb_001989_070 Hb_008749_010--Hb_001989_070 Hb_009476_070 Hb_009476_070 Hb_000365_180--Hb_009476_070 Hb_000365_180--Hb_000163_180 Hb_000365_180--Hb_001989_070 Hb_002010_100 Hb_002010_100 Hb_000365_180--Hb_002010_100 Hb_033187_020 Hb_033187_020 Hb_000365_180--Hb_033187_020 Hb_006120_210 Hb_006120_210 Hb_003747_250--Hb_006120_210 Hb_000742_130 Hb_000742_130 Hb_003747_250--Hb_000742_130 Hb_008806_040 Hb_008806_040 Hb_003747_250--Hb_008806_040 Hb_003747_250--Hb_004228_070 Hb_000365_430 Hb_000365_430 Hb_003747_250--Hb_000365_430 Hb_009907_020 Hb_009907_020 Hb_000878_090--Hb_009907_020 Hb_001160_050 Hb_001160_050 Hb_000878_090--Hb_001160_050 Hb_002374_030 Hb_002374_030 Hb_000878_090--Hb_002374_030 Hb_004040_010 Hb_004040_010 Hb_000878_090--Hb_004040_010 Hb_000152_410 Hb_000152_410 Hb_000878_090--Hb_000152_410 Hb_142026_010 Hb_142026_010 Hb_000163_180--Hb_142026_010 Hb_030982_050 Hb_030982_050 Hb_000163_180--Hb_030982_050 Hb_003092_020 Hb_003092_020 Hb_000163_180--Hb_003092_020 Hb_106089_010 Hb_106089_010 Hb_000163_180--Hb_106089_010 Hb_021576_130 Hb_021576_130 Hb_004228_070--Hb_021576_130 Hb_002205_150 Hb_002205_150 Hb_004228_070--Hb_002205_150 Hb_003454_050 Hb_003454_050 Hb_004228_070--Hb_003454_050 Hb_007123_010 Hb_007123_010 Hb_004228_070--Hb_007123_010 Hb_044653_050 Hb_044653_050 Hb_004228_070--Hb_044653_050 Hb_006922_020 Hb_006922_020 Hb_004228_070--Hb_006922_020 Hb_001989_070--Hb_002010_100 Hb_007483_080 Hb_007483_080 Hb_001989_070--Hb_007483_080 Hb_002849_180 Hb_002849_180 Hb_001989_070--Hb_002849_180 Hb_001989_070--Hb_033187_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.742702 33.5659 55.6268 43.6266 0.0626207 0.032388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0490835 0.0901226 0.0245787 11.8706 21.1049

CAGE analysis