Hb_009557_080

Information

Type -
Description -
Location Contig9557: 63088-63534
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04860g
description hypothetical protein
nr
ID XP_011043607.1
description PREDICTED: glutaredoxin-C9-like [Populus euphratica]
swissprot
ID Q9SGP6
description Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 PE=1 SV=1
trembl
ID B9MYC1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s04860g PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin-c9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009557_080 0.0 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
2 Hb_002725_080 0.0965867516 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_001269_240 0.0980634125 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
4 Hb_115114_010 0.0985879569 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010417_110 0.0991167946 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004879_030 0.101466391 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
7 Hb_000140_220 0.1017526174 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
8 Hb_000813_090 0.1021818464 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
9 Hb_004724_300 0.106736428 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
10 Hb_001046_040 0.1096911729 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_000325_070 0.1101206134 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001821_050 0.114910154 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
13 Hb_026415_010 0.1173574397 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
14 Hb_000574_230 0.117961291 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
15 Hb_000015_230 0.1252434352 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
16 Hb_007257_070 0.1287116911 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
17 Hb_026050_010 0.1316890097 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_003073_040 0.1330232986 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
19 Hb_005694_150 0.1331030779 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
20 Hb_000375_150 0.1342744624 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009557_080 Hb_009557_080 Hb_002725_080 Hb_002725_080 Hb_009557_080--Hb_002725_080 Hb_001269_240 Hb_001269_240 Hb_009557_080--Hb_001269_240 Hb_115114_010 Hb_115114_010 Hb_009557_080--Hb_115114_010 Hb_010417_110 Hb_010417_110 Hb_009557_080--Hb_010417_110 Hb_004879_030 Hb_004879_030 Hb_009557_080--Hb_004879_030 Hb_000140_220 Hb_000140_220 Hb_009557_080--Hb_000140_220 Hb_004724_300 Hb_004724_300 Hb_002725_080--Hb_004724_300 Hb_024650_010 Hb_024650_010 Hb_002725_080--Hb_024650_010 Hb_002725_080--Hb_010417_110 Hb_000574_230 Hb_000574_230 Hb_002725_080--Hb_000574_230 Hb_006002_020 Hb_006002_020 Hb_002725_080--Hb_006002_020 Hb_007257_070 Hb_007257_070 Hb_001269_240--Hb_007257_070 Hb_001269_240--Hb_000574_230 Hb_026050_010 Hb_026050_010 Hb_001269_240--Hb_026050_010 Hb_007441_360 Hb_007441_360 Hb_001269_240--Hb_007441_360 Hb_005074_010 Hb_005074_010 Hb_001269_240--Hb_005074_010 Hb_132259_010 Hb_132259_010 Hb_115114_010--Hb_132259_010 Hb_001046_040 Hb_001046_040 Hb_115114_010--Hb_001046_040 Hb_115114_010--Hb_004879_030 Hb_044624_010 Hb_044624_010 Hb_115114_010--Hb_044624_010 Hb_115114_010--Hb_000140_220 Hb_000813_090 Hb_000813_090 Hb_115114_010--Hb_000813_090 Hb_004450_030 Hb_004450_030 Hb_010417_110--Hb_004450_030 Hb_010417_110--Hb_006002_020 Hb_000375_150 Hb_000375_150 Hb_010417_110--Hb_000375_150 Hb_005618_010 Hb_005618_010 Hb_010417_110--Hb_005618_010 Hb_026415_010 Hb_026415_010 Hb_004879_030--Hb_026415_010 Hb_152414_010 Hb_152414_010 Hb_004879_030--Hb_152414_010 Hb_000325_070 Hb_000325_070 Hb_004879_030--Hb_000325_070 Hb_006358_030 Hb_006358_030 Hb_004879_030--Hb_006358_030 Hb_003579_010 Hb_003579_010 Hb_000140_220--Hb_003579_010 Hb_003073_040 Hb_003073_040 Hb_000140_220--Hb_003073_040 Hb_000049_290 Hb_000049_290 Hb_000140_220--Hb_000049_290 Hb_004324_220 Hb_004324_220 Hb_000140_220--Hb_004324_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22367 106.717 44.7837 68.6695 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.32484 1.14819 0 4.77922 63.5598

CAGE analysis