Hb_006002_020

Information

Type -
Description -
Location Contig6002: 50448-54290
Sequence    

Annotation

kegg
ID rcu:RCOM_0707270
description gulonolactone oxidase, putative (EC:1.5.99.12)
nr
ID XP_012077200.1
description PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
swissprot
ID Q9FUJ1
description Cytokinin dehydrogenase 7 OS=Arabidopsis thaliana GN=CKX7 PE=1 SV=1
trembl
ID A0A067KD15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07603 PE=4 SV=1
Gene Ontology
ID GO:0008762
description cytokinin dehydrogenase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50556: 50380-54316
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006002_020 0.0 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
2 Hb_000418_060 0.0776378876 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
3 Hb_000047_010 0.0885672092 - - PREDICTED: expansin-like A1 [Jatropha curcas]
4 Hb_006153_020 0.0944092409 - - vacuolar invertase [Manihot esculenta]
5 Hb_002725_080 0.0968834128 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_004109_110 0.1002550863 - - dioxygenase family protein [Populus trichocarpa]
7 Hb_010417_110 0.1062601719 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002548_020 0.1148876929 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
9 Hb_002218_080 0.1170827906 - - Ankyrin repeat family protein, putative [Theobroma cacao]
10 Hb_002110_050 0.1171793362 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002811_320 0.1192063001 - - cation-transporting atpase plant, putative [Ricinus communis]
12 Hb_002783_130 0.1199776178 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
13 Hb_001277_370 0.1207172146 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
14 Hb_000892_030 0.1230437896 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
15 Hb_001518_030 0.1237333673 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_004241_100 0.1265968629 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
17 Hb_155015_020 0.1278314048 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
18 Hb_000024_020 0.1299921497 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
19 Hb_007632_230 0.1300368691 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
20 Hb_000127_200 0.1301828607 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]

Gene co-expression network

sample Hb_006002_020 Hb_006002_020 Hb_000418_060 Hb_000418_060 Hb_006002_020--Hb_000418_060 Hb_000047_010 Hb_000047_010 Hb_006002_020--Hb_000047_010 Hb_006153_020 Hb_006153_020 Hb_006002_020--Hb_006153_020 Hb_002725_080 Hb_002725_080 Hb_006002_020--Hb_002725_080 Hb_004109_110 Hb_004109_110 Hb_006002_020--Hb_004109_110 Hb_010417_110 Hb_010417_110 Hb_006002_020--Hb_010417_110 Hb_000418_060--Hb_000047_010 Hb_001254_020 Hb_001254_020 Hb_000418_060--Hb_001254_020 Hb_000319_010 Hb_000319_010 Hb_000418_060--Hb_000319_010 Hb_011915_020 Hb_011915_020 Hb_000418_060--Hb_011915_020 Hb_002783_130 Hb_002783_130 Hb_000418_060--Hb_002783_130 Hb_000892_030 Hb_000892_030 Hb_000047_010--Hb_000892_030 Hb_000047_010--Hb_004109_110 Hb_002400_040 Hb_002400_040 Hb_000047_010--Hb_002400_040 Hb_000047_010--Hb_006153_020 Hb_001221_050 Hb_001221_050 Hb_006153_020--Hb_001221_050 Hb_005946_200 Hb_005946_200 Hb_006153_020--Hb_005946_200 Hb_006153_020--Hb_004109_110 Hb_021576_160 Hb_021576_160 Hb_006153_020--Hb_021576_160 Hb_001333_030 Hb_001333_030 Hb_006153_020--Hb_001333_030 Hb_004724_300 Hb_004724_300 Hb_002725_080--Hb_004724_300 Hb_024650_010 Hb_024650_010 Hb_002725_080--Hb_024650_010 Hb_002725_080--Hb_010417_110 Hb_000574_230 Hb_000574_230 Hb_002725_080--Hb_000574_230 Hb_009557_080 Hb_009557_080 Hb_002725_080--Hb_009557_080 Hb_004109_110--Hb_021576_160 Hb_001518_030 Hb_001518_030 Hb_004109_110--Hb_001518_030 Hb_004109_110--Hb_024650_010 Hb_010417_110--Hb_009557_080 Hb_004450_030 Hb_004450_030 Hb_010417_110--Hb_004450_030 Hb_000375_150 Hb_000375_150 Hb_010417_110--Hb_000375_150 Hb_005618_010 Hb_005618_010 Hb_010417_110--Hb_005618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.025955 11.2731 7.64339 9.57814 0.0243056 0.0242744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0295507 0.116244 0 0.120563 3.41132

CAGE analysis