Hb_000892_030

Information

Type -
Description -
Location Contig892: 47081-51353
Sequence    

Annotation

kegg
ID rcu:RCOM_0828260
description hypothetical protein
nr
ID XP_012065505.1
description PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID B9S3S0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0828260 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61688: 49529-51271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000892_030 0.0 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
2 Hb_000047_010 0.073691361 - - PREDICTED: expansin-like A1 [Jatropha curcas]
3 Hb_094437_050 0.0990167439 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
4 Hb_005725_280 0.1065887438 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
5 Hb_005694_150 0.107029244 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
6 Hb_000365_340 0.1072483244 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
7 Hb_002400_040 0.1102427731 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
8 Hb_050847_030 0.1142025802 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
9 Hb_097634_010 0.1158570914 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
10 Hb_000418_060 0.1164745937 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
11 Hb_005408_080 0.1219118202 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
12 Hb_006002_020 0.1230437896 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
13 Hb_010417_110 0.124148844 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002725_080 0.1242184104 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_004109_110 0.1284248536 - - dioxygenase family protein [Populus trichocarpa]
16 Hb_001019_020 0.1301107475 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007441_360 0.1328452781 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
18 Hb_000567_110 0.1328601245 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
19 Hb_003633_150 0.1334632198 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
20 Hb_001254_020 0.1357427887 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000892_030 Hb_000892_030 Hb_000047_010 Hb_000047_010 Hb_000892_030--Hb_000047_010 Hb_094437_050 Hb_094437_050 Hb_000892_030--Hb_094437_050 Hb_005725_280 Hb_005725_280 Hb_000892_030--Hb_005725_280 Hb_005694_150 Hb_005694_150 Hb_000892_030--Hb_005694_150 Hb_000365_340 Hb_000365_340 Hb_000892_030--Hb_000365_340 Hb_002400_040 Hb_002400_040 Hb_000892_030--Hb_002400_040 Hb_000418_060 Hb_000418_060 Hb_000047_010--Hb_000418_060 Hb_006002_020 Hb_006002_020 Hb_000047_010--Hb_006002_020 Hb_004109_110 Hb_004109_110 Hb_000047_010--Hb_004109_110 Hb_000047_010--Hb_002400_040 Hb_006153_020 Hb_006153_020 Hb_000047_010--Hb_006153_020 Hb_002498_250 Hb_002498_250 Hb_094437_050--Hb_002498_250 Hb_001019_020 Hb_001019_020 Hb_094437_050--Hb_001019_020 Hb_094437_050--Hb_005725_280 Hb_094437_050--Hb_002400_040 Hb_094437_050--Hb_000047_010 Hb_000336_180 Hb_000336_180 Hb_005725_280--Hb_000336_180 Hb_005725_280--Hb_002498_250 Hb_004218_080 Hb_004218_080 Hb_005725_280--Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_005725_280--Hb_007193_030 Hb_050847_030 Hb_050847_030 Hb_005694_150--Hb_050847_030 Hb_000375_150 Hb_000375_150 Hb_005694_150--Hb_000375_150 Hb_000325_070 Hb_000325_070 Hb_005694_150--Hb_000325_070 Hb_005694_150--Hb_000365_340 Hb_013691_060 Hb_013691_060 Hb_005694_150--Hb_013691_060 Hb_000567_110 Hb_000567_110 Hb_000365_340--Hb_000567_110 Hb_000365_340--Hb_050847_030 Hb_012799_040 Hb_012799_040 Hb_000365_340--Hb_012799_040 Hb_000365_340--Hb_004218_080 Hb_005408_080 Hb_005408_080 Hb_002400_040--Hb_005408_080 Hb_182970_010 Hb_182970_010 Hb_002400_040--Hb_182970_010 Hb_002400_040--Hb_004109_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.419617 28.731 16.8331 23.5598 0.816065 0.265861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.635496 0.853037 0.392099 1.26786 10.3354

CAGE analysis