Hb_005408_080

Information

Type -
Description -
Location Contig5408: 102370-104412
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10810g
description POPTRDRAFT_867268; armadillo/beta-catenin repeat family protein
nr
ID XP_012089699.1
description PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
swissprot
ID Q9LZW3
description U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1
trembl
ID A0A067JFW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00368 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005408_080 0.0 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
2 Hb_002400_040 0.1044158751 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
3 Hb_000892_030 0.1219118202 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
4 Hb_094437_050 0.1291340346 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
5 Hb_000110_260 0.1295509583 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
6 Hb_005725_280 0.133758205 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
7 Hb_001329_080 0.1352007858 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
8 Hb_001472_140 0.1352179141 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
9 Hb_001102_200 0.1377144777 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
10 Hb_182970_010 0.1393663203 - - calmodulin-binding protein 60-D [Populus trichocarpa]
11 Hb_000077_160 0.139571525 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
12 Hb_000047_010 0.1417691256 - - PREDICTED: expansin-like A1 [Jatropha curcas]
13 Hb_062226_150 0.1427066518 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
14 Hb_000210_160 0.1433019041 - - PREDICTED: protein YLS9-like [Jatropha curcas]
15 Hb_002026_050 0.1494551286 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
16 Hb_000371_120 0.1509194794 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
17 Hb_001019_020 0.1522969885 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001294_050 0.153861033 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
19 Hb_003209_090 0.1540204221 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
20 Hb_005245_140 0.1548333785 - - PREDICTED: ribonuclease 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005408_080 Hb_005408_080 Hb_002400_040 Hb_002400_040 Hb_005408_080--Hb_002400_040 Hb_000892_030 Hb_000892_030 Hb_005408_080--Hb_000892_030 Hb_094437_050 Hb_094437_050 Hb_005408_080--Hb_094437_050 Hb_000110_260 Hb_000110_260 Hb_005408_080--Hb_000110_260 Hb_005725_280 Hb_005725_280 Hb_005408_080--Hb_005725_280 Hb_001329_080 Hb_001329_080 Hb_005408_080--Hb_001329_080 Hb_000047_010 Hb_000047_010 Hb_002400_040--Hb_000047_010 Hb_002400_040--Hb_000892_030 Hb_002400_040--Hb_094437_050 Hb_182970_010 Hb_182970_010 Hb_002400_040--Hb_182970_010 Hb_004109_110 Hb_004109_110 Hb_002400_040--Hb_004109_110 Hb_000892_030--Hb_000047_010 Hb_000892_030--Hb_094437_050 Hb_000892_030--Hb_005725_280 Hb_005694_150 Hb_005694_150 Hb_000892_030--Hb_005694_150 Hb_000365_340 Hb_000365_340 Hb_000892_030--Hb_000365_340 Hb_002498_250 Hb_002498_250 Hb_094437_050--Hb_002498_250 Hb_001019_020 Hb_001019_020 Hb_094437_050--Hb_001019_020 Hb_094437_050--Hb_005725_280 Hb_094437_050--Hb_000047_010 Hb_001102_200 Hb_001102_200 Hb_000110_260--Hb_001102_200 Hb_089305_010 Hb_089305_010 Hb_000110_260--Hb_089305_010 Hb_000120_090 Hb_000120_090 Hb_000110_260--Hb_000120_090 Hb_021409_110 Hb_021409_110 Hb_000110_260--Hb_021409_110 Hb_091318_010 Hb_091318_010 Hb_000110_260--Hb_091318_010 Hb_000336_180 Hb_000336_180 Hb_005725_280--Hb_000336_180 Hb_005725_280--Hb_002498_250 Hb_004218_080 Hb_004218_080 Hb_005725_280--Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_005725_280--Hb_007193_030 Hb_001472_140 Hb_001472_140 Hb_001329_080--Hb_001472_140 Hb_000009_200 Hb_000009_200 Hb_001329_080--Hb_000009_200 Hb_005714_100 Hb_005714_100 Hb_001329_080--Hb_005714_100 Hb_007382_100 Hb_007382_100 Hb_001329_080--Hb_007382_100 Hb_001329_080--Hb_182970_010 Hb_056196_060 Hb_056196_060 Hb_001329_080--Hb_056196_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.42447 27.7804 26.1362 36.1032 1.74033 0.682842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23439 2.61893 1.48087 3.51149 11.1864

CAGE analysis