Hb_004218_080

Information

Type -
Description -
Location Contig4218: 76979-85585
Sequence    

Annotation

kegg
ID rcu:RCOM_1453000
description hypothetical protein
nr
ID XP_012068627.1
description PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24511 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41658: 77048-85556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_080 0.0 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
2 Hb_007193_030 0.0673319883 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
3 Hb_005725_280 0.1137800621 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
4 Hb_002498_250 0.1184845235 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
5 Hb_000156_080 0.1257677463 - - Potassium channel KAT2, putative [Ricinus communis]
6 Hb_000365_340 0.1264971529 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
7 Hb_003106_240 0.1273093876 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
8 Hb_001623_410 0.1307248288 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
9 Hb_132840_090 0.1315792364 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
10 Hb_012814_030 0.1355723142 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
11 Hb_054232_020 0.1372595957 - - Potassium channel SKOR, putative [Ricinus communis]
12 Hb_027402_100 0.1373765003 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
13 Hb_012799_040 0.1443937989 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
14 Hb_000318_410 0.1453000751 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
15 Hb_001369_020 0.1464253585 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
16 Hb_073171_050 0.1479564832 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
17 Hb_011457_080 0.1479959982 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
18 Hb_000086_620 0.1588983772 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
19 Hb_001948_090 0.159473967 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
20 Hb_000336_180 0.1597864914 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004218_080 Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_004218_080--Hb_007193_030 Hb_005725_280 Hb_005725_280 Hb_004218_080--Hb_005725_280 Hb_002498_250 Hb_002498_250 Hb_004218_080--Hb_002498_250 Hb_000156_080 Hb_000156_080 Hb_004218_080--Hb_000156_080 Hb_000365_340 Hb_000365_340 Hb_004218_080--Hb_000365_340 Hb_003106_240 Hb_003106_240 Hb_004218_080--Hb_003106_240 Hb_001369_020 Hb_001369_020 Hb_007193_030--Hb_001369_020 Hb_001623_410 Hb_001623_410 Hb_007193_030--Hb_001623_410 Hb_073171_050 Hb_073171_050 Hb_007193_030--Hb_073171_050 Hb_007193_030--Hb_005725_280 Hb_003905_040 Hb_003905_040 Hb_007193_030--Hb_003905_040 Hb_000336_180 Hb_000336_180 Hb_005725_280--Hb_000336_180 Hb_094437_050 Hb_094437_050 Hb_005725_280--Hb_094437_050 Hb_000892_030 Hb_000892_030 Hb_005725_280--Hb_000892_030 Hb_005725_280--Hb_002498_250 Hb_002498_250--Hb_094437_050 Hb_000373_250 Hb_000373_250 Hb_002498_250--Hb_000373_250 Hb_011930_120 Hb_011930_120 Hb_002498_250--Hb_011930_120 Hb_007120_010 Hb_007120_010 Hb_002498_250--Hb_007120_010 Hb_004109_150 Hb_004109_150 Hb_000156_080--Hb_004109_150 Hb_011457_080 Hb_011457_080 Hb_000156_080--Hb_011457_080 Hb_000402_180 Hb_000402_180 Hb_000156_080--Hb_000402_180 Hb_002030_100 Hb_002030_100 Hb_000156_080--Hb_002030_100 Hb_000156_080--Hb_007193_030 Hb_005694_150 Hb_005694_150 Hb_000365_340--Hb_005694_150 Hb_000365_340--Hb_000892_030 Hb_000567_110 Hb_000567_110 Hb_000365_340--Hb_000567_110 Hb_050847_030 Hb_050847_030 Hb_000365_340--Hb_050847_030 Hb_012799_040 Hb_012799_040 Hb_000365_340--Hb_012799_040 Hb_003106_240--Hb_011457_080 Hb_010180_050 Hb_010180_050 Hb_003106_240--Hb_010180_050 Hb_027402_100 Hb_027402_100 Hb_003106_240--Hb_027402_100 Hb_000035_060 Hb_000035_060 Hb_003106_240--Hb_000035_060 Hb_003106_240--Hb_007193_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.50526 206.936 126.742 79.2927 9.25504 11.1535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.3711 1.69997 5.05445 11.4405 91.3155

CAGE analysis