Hb_094437_050

Information

Type -
Description -
Location Contig94437: 10113-12264
Sequence    

Annotation

kegg
ID rcu:RCOM_1588060
description hypothetical protein
nr
ID XP_012068255.1
description PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16053 PE=4 SV=1
Gene Ontology
ID GO:0005622
description syntaxin t-snare family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63232: 9959-13627
cDNA
(Sanger)
(ID:Location)		 011_C02.ab1: 10041-11121 , 014_M06.ab1: 10264-11279

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094437_050 0.0 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
2 Hb_002498_250 0.0912698452 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_001019_020 0.0933237928 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000892_030 0.0990167439 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
5 Hb_005725_280 0.1011649739 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
6 Hb_002400_040 0.1127366458 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
7 Hb_000047_010 0.1152989765 - - PREDICTED: expansin-like A1 [Jatropha curcas]
8 Hb_000418_060 0.1191336994 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
9 Hb_001247_160 0.1241221377 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
10 Hb_000373_250 0.1286050321 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
11 Hb_005408_080 0.1291340346 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
12 Hb_002936_030 0.1297625843 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
13 Hb_003078_070 0.134801602 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
14 Hb_005048_120 0.1350282956 - - -
15 Hb_000365_340 0.1355812171 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
16 Hb_002233_080 0.1360266988 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
17 Hb_002311_150 0.1381335199 - - Protein COBRA precursor, putative [Ricinus communis]
18 Hb_003633_150 0.1390950761 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
19 Hb_005282_010 0.1452490725 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
20 Hb_002014_050 0.14751934 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_094437_050 Hb_094437_050 Hb_002498_250 Hb_002498_250 Hb_094437_050--Hb_002498_250 Hb_001019_020 Hb_001019_020 Hb_094437_050--Hb_001019_020 Hb_000892_030 Hb_000892_030 Hb_094437_050--Hb_000892_030 Hb_005725_280 Hb_005725_280 Hb_094437_050--Hb_005725_280 Hb_002400_040 Hb_002400_040 Hb_094437_050--Hb_002400_040 Hb_000047_010 Hb_000047_010 Hb_094437_050--Hb_000047_010 Hb_000373_250 Hb_000373_250 Hb_002498_250--Hb_000373_250 Hb_002498_250--Hb_005725_280 Hb_004218_080 Hb_004218_080 Hb_002498_250--Hb_004218_080 Hb_011930_120 Hb_011930_120 Hb_002498_250--Hb_011930_120 Hb_007120_010 Hb_007120_010 Hb_002498_250--Hb_007120_010 Hb_002233_080 Hb_002233_080 Hb_001019_020--Hb_002233_080 Hb_001247_160 Hb_001247_160 Hb_001019_020--Hb_001247_160 Hb_001019_020--Hb_000047_010 Hb_012272_010 Hb_012272_010 Hb_001019_020--Hb_012272_010 Hb_011915_020 Hb_011915_020 Hb_001019_020--Hb_011915_020 Hb_000892_030--Hb_000047_010 Hb_000892_030--Hb_005725_280 Hb_005694_150 Hb_005694_150 Hb_000892_030--Hb_005694_150 Hb_000365_340 Hb_000365_340 Hb_000892_030--Hb_000365_340 Hb_000892_030--Hb_002400_040 Hb_000336_180 Hb_000336_180 Hb_005725_280--Hb_000336_180 Hb_005725_280--Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_005725_280--Hb_007193_030 Hb_005408_080 Hb_005408_080 Hb_002400_040--Hb_005408_080 Hb_002400_040--Hb_000047_010 Hb_182970_010 Hb_182970_010 Hb_002400_040--Hb_182970_010 Hb_004109_110 Hb_004109_110 Hb_002400_040--Hb_004109_110 Hb_000418_060 Hb_000418_060 Hb_000047_010--Hb_000418_060 Hb_006002_020 Hb_006002_020 Hb_000047_010--Hb_006002_020 Hb_000047_010--Hb_004109_110 Hb_006153_020 Hb_006153_020 Hb_000047_010--Hb_006153_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33138 74.0156 56.8052 53.5983 2.67504 2.05009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63079 2.4435 2.1062 2.82451 17.3549

CAGE analysis