Hb_000336_180

Information

Type -
Description -
Location Contig336: 251625-252887
Sequence    

Annotation

kegg
ID rcu:RCOM_1677920
description hypothetical protein
nr
ID XP_002509542.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RBK8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1677920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005725_280 0.0908864563 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
3 Hb_001294_050 0.1029959898 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
4 Hb_001102_090 0.1053740114 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
5 Hb_132840_020 0.118763482 - - PREDICTED: protein LHY [Jatropha curcas]
6 Hb_001396_120 0.1207876358 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
7 Hb_007224_010 0.1215828501 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
8 Hb_005332_140 0.1275616418 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
9 Hb_021409_110 0.1319361694 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_001386_020 0.1321209641 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001519_060 0.1344835935 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
12 Hb_000923_100 0.1351536001 - - chloride channel clc, putative [Ricinus communis]
13 Hb_000230_470 0.1366332454 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
14 Hb_002965_080 0.1369410461 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
15 Hb_000753_140 0.1380614684 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
16 Hb_001102_200 0.1408919534 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
17 Hb_001627_010 0.1409035896 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
18 Hb_000086_640 0.1418993337 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
19 Hb_000009_200 0.143944086 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
20 Hb_004678_010 0.1450885209 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000336_180 Hb_000336_180 Hb_005725_280 Hb_005725_280 Hb_000336_180--Hb_005725_280 Hb_001294_050 Hb_001294_050 Hb_000336_180--Hb_001294_050 Hb_001102_090 Hb_001102_090 Hb_000336_180--Hb_001102_090 Hb_132840_020 Hb_132840_020 Hb_000336_180--Hb_132840_020 Hb_001396_120 Hb_001396_120 Hb_000336_180--Hb_001396_120 Hb_007224_010 Hb_007224_010 Hb_000336_180--Hb_007224_010 Hb_094437_050 Hb_094437_050 Hb_005725_280--Hb_094437_050 Hb_000892_030 Hb_000892_030 Hb_005725_280--Hb_000892_030 Hb_002498_250 Hb_002498_250 Hb_005725_280--Hb_002498_250 Hb_004218_080 Hb_004218_080 Hb_005725_280--Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_005725_280--Hb_007193_030 Hb_001294_050--Hb_001102_090 Hb_001294_050--Hb_132840_020 Hb_001627_010 Hb_001627_010 Hb_001294_050--Hb_001627_010 Hb_048476_040 Hb_048476_040 Hb_001294_050--Hb_048476_040 Hb_001294_050--Hb_005725_280 Hb_005332_140 Hb_005332_140 Hb_001102_090--Hb_005332_140 Hb_001102_090--Hb_132840_020 Hb_000035_490 Hb_000035_490 Hb_001102_090--Hb_000035_490 Hb_000009_200 Hb_000009_200 Hb_001102_090--Hb_000009_200 Hb_000086_640 Hb_000086_640 Hb_132840_020--Hb_000086_640 Hb_132840_020--Hb_048476_040 Hb_011381_070 Hb_011381_070 Hb_132840_020--Hb_011381_070 Hb_132840_020--Hb_001627_010 Hb_000329_790 Hb_000329_790 Hb_132840_020--Hb_000329_790 Hb_001519_060 Hb_001519_060 Hb_001396_120--Hb_001519_060 Hb_002965_080 Hb_002965_080 Hb_001396_120--Hb_002965_080 Hb_002014_050 Hb_002014_050 Hb_001396_120--Hb_002014_050 Hb_001396_120--Hb_000009_200 Hb_001396_120--Hb_005725_280 Hb_007224_010--Hb_001627_010 Hb_021409_110 Hb_021409_110 Hb_007224_010--Hb_021409_110 Hb_007224_010--Hb_132840_020 Hb_007224_010--Hb_001519_060 Hb_007224_010--Hb_000086_640 Hb_000928_250 Hb_000928_250 Hb_007224_010--Hb_000928_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18957 11.3323 9.64176 8.31505 1.26373 0.834092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.107 1.02096 0.280012 1.43014 5.92012

CAGE analysis