Hb_000928_250

Information

Type -
Description -
Location Contig928: 228046-230109
Sequence    

Annotation

kegg
ID rcu:RCOM_1516680
description calcium ion binding protein, putative
nr
ID XP_002524001.1
description calcium ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDD2
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_1516680 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef hand family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62781: 228044-230064 , PASA_asmbl_62782: 228638-229335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_250 0.0 - - calcium ion binding protein, putative [Ricinus communis]
2 Hb_003106_200 0.0803703474 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
3 Hb_015026_020 0.0803872661 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
4 Hb_001894_160 0.0805019655 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006935_040 0.0935337506 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
6 Hb_011671_110 0.1099422785 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
7 Hb_000622_210 0.1139323499 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
8 Hb_029622_030 0.1141206715 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_012787_030 0.1150875355 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
10 Hb_007224_010 0.1176899896 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
11 Hb_005941_020 0.1199618463 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
12 Hb_000445_210 0.123384801 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
13 Hb_002249_170 0.1269696694 - - copine, putative [Ricinus communis]
14 Hb_001250_040 0.1312159075 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
15 Hb_161901_020 0.1314411258 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
16 Hb_153553_040 0.1336887351 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
17 Hb_033930_010 0.1348995997 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
18 Hb_000212_300 0.1358288492 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
19 Hb_000086_640 0.1376542383 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
20 Hb_000818_120 0.1384431412 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000928_250 Hb_000928_250 Hb_003106_200 Hb_003106_200 Hb_000928_250--Hb_003106_200 Hb_015026_020 Hb_015026_020 Hb_000928_250--Hb_015026_020 Hb_001894_160 Hb_001894_160 Hb_000928_250--Hb_001894_160 Hb_006935_040 Hb_006935_040 Hb_000928_250--Hb_006935_040 Hb_011671_110 Hb_011671_110 Hb_000928_250--Hb_011671_110 Hb_000622_210 Hb_000622_210 Hb_000928_250--Hb_000622_210 Hb_003106_200--Hb_015026_020 Hb_000818_120 Hb_000818_120 Hb_003106_200--Hb_000818_120 Hb_002249_170 Hb_002249_170 Hb_003106_200--Hb_002249_170 Hb_000032_200 Hb_000032_200 Hb_003106_200--Hb_000032_200 Hb_001198_080 Hb_001198_080 Hb_003106_200--Hb_001198_080 Hb_015026_020--Hb_001894_160 Hb_015026_020--Hb_011671_110 Hb_005941_020 Hb_005941_020 Hb_015026_020--Hb_005941_020 Hb_000076_100 Hb_000076_100 Hb_015026_020--Hb_000076_100 Hb_001894_160--Hb_011671_110 Hb_001894_160--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_001894_160--Hb_033930_010 Hb_001894_160--Hb_000622_210 Hb_006935_040--Hb_001894_160 Hb_000008_390 Hb_000008_390 Hb_006935_040--Hb_000008_390 Hb_006935_040--Hb_015026_020 Hb_006935_040--Hb_003106_200 Hb_001414_050 Hb_001414_050 Hb_006935_040--Hb_001414_050 Hb_011671_110--Hb_005941_020 Hb_011671_110--Hb_033930_010 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010 Hb_000622_210--Hb_033930_010 Hb_161901_020 Hb_161901_020 Hb_000622_210--Hb_161901_020 Hb_000318_410 Hb_000318_410 Hb_000622_210--Hb_000318_410 Hb_000622_210--Hb_005941_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5368 152.104 308.682 87.4344 27.709 31.9899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8453 28.8709 19.9596 22.0898 114.684

CAGE analysis