Hb_003106_200

Information

Type -
Description -
Location Contig3106: 146139-150803
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08320g
description POPTRDRAFT_733232; hypothetical protein
nr
ID XP_012080129.1
description PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
swissprot
ID C0SVV6
description Calmodulin-binding protein 60 A OS=Arabidopsis thaliana GN=CBP60A PE=2 SV=1
trembl
ID A0A067KH39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32899: 148272-148627 , PASA_asmbl_32900: 146091-150792 , PASA_asmbl_32901: 145849-146045 , PASA_asmbl_32902: 145827-148791 , PASA_asmbl_32904: 146091-150792
cDNA
(Sanger)
(ID:Location)		 014_H21.ab1: 145827-148227 , 053_K16.ab1: 145827-148096

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_200 0.0 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
2 Hb_000928_250 0.0803703474 - - calcium ion binding protein, putative [Ricinus communis]
3 Hb_015026_020 0.0892673878 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
4 Hb_000818_120 0.0988633776 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002249_170 0.1013647355 - - copine, putative [Ricinus communis]
6 Hb_000032_200 0.1082188122 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_001198_080 0.1114660644 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
8 Hb_012787_030 0.1154388421 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
9 Hb_006935_040 0.1226018115 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
10 Hb_001894_160 0.1240189515 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003549_130 0.1267027099 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_029622_030 0.1300426761 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_153553_040 0.1302158826 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
14 Hb_001160_110 0.1305233459 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
15 Hb_011671_110 0.1305261874 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
16 Hb_001141_050 0.132822459 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
17 Hb_001511_030 0.1362591556 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Jatropha curcas]
18 Hb_000212_300 0.1363128564 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
19 Hb_000445_210 0.1375539382 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
20 Hb_002026_090 0.1406224427 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_003106_200 Hb_003106_200 Hb_000928_250 Hb_000928_250 Hb_003106_200--Hb_000928_250 Hb_015026_020 Hb_015026_020 Hb_003106_200--Hb_015026_020 Hb_000818_120 Hb_000818_120 Hb_003106_200--Hb_000818_120 Hb_002249_170 Hb_002249_170 Hb_003106_200--Hb_002249_170 Hb_000032_200 Hb_000032_200 Hb_003106_200--Hb_000032_200 Hb_001198_080 Hb_001198_080 Hb_003106_200--Hb_001198_080 Hb_000928_250--Hb_015026_020 Hb_001894_160 Hb_001894_160 Hb_000928_250--Hb_001894_160 Hb_006935_040 Hb_006935_040 Hb_000928_250--Hb_006935_040 Hb_011671_110 Hb_011671_110 Hb_000928_250--Hb_011671_110 Hb_000622_210 Hb_000622_210 Hb_000928_250--Hb_000622_210 Hb_015026_020--Hb_001894_160 Hb_015026_020--Hb_011671_110 Hb_005941_020 Hb_005941_020 Hb_015026_020--Hb_005941_020 Hb_000076_100 Hb_000076_100 Hb_015026_020--Hb_000076_100 Hb_000818_120--Hb_001198_080 Hb_001511_030 Hb_001511_030 Hb_000818_120--Hb_001511_030 Hb_000046_310 Hb_000046_310 Hb_000818_120--Hb_000046_310 Hb_001155_050 Hb_001155_050 Hb_000818_120--Hb_001155_050 Hb_000818_120--Hb_002249_170 Hb_001318_150 Hb_001318_150 Hb_002249_170--Hb_001318_150 Hb_054865_050 Hb_054865_050 Hb_002249_170--Hb_054865_050 Hb_002249_170--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_002249_170--Hb_086639_050 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210 Hb_001141_050 Hb_001141_050 Hb_000032_200--Hb_001141_050 Hb_003430_040 Hb_003430_040 Hb_000032_200--Hb_003430_040 Hb_000347_140 Hb_000347_140 Hb_000032_200--Hb_000347_140 Hb_012787_030 Hb_012787_030 Hb_000032_200--Hb_012787_030 Hb_000732_030 Hb_000732_030 Hb_000032_200--Hb_000732_030 Hb_001198_080--Hb_001155_050 Hb_003549_130 Hb_003549_130 Hb_001198_080--Hb_003549_130 Hb_002217_190 Hb_002217_190 Hb_001198_080--Hb_002217_190 Hb_004679_040 Hb_004679_040 Hb_001198_080--Hb_004679_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3111 60.4556 160.406 48.5047 11.4938 15.1322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5769 10.7601 15.2611 18.6341 50.5102

CAGE analysis