Hb_001141_050

Information

Type transcription factor
Description TF Family: CPP
Location Contig1141: 57977-63311
Sequence    

Annotation

kegg
ID rcu:RCOM_0911450
description tso1, putative
nr
ID XP_012069685.1
description PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
swissprot
ID F4JIF5
description Protein tesmin/TSO1-like CXC 2 OS=Arabidopsis thaliana GN=TCX2 PE=1 SV=1
trembl
ID A0A067KVT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02215 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04230: 57935-61974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_050 0.0 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
2 Hb_001922_110 0.0823777101 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000032_410 0.1031862977 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
4 Hb_000032_200 0.1044208842 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
5 Hb_006133_020 0.1112500753 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
6 Hb_000076_250 0.1152385444 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003640_050 0.1162554207 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000230_190 0.1172135184 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
9 Hb_000227_400 0.1178585602 - - lipoxygenase, putative [Ricinus communis]
10 Hb_008511_040 0.1189180685 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_004163_030 0.1200274548 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
12 Hb_000792_050 0.120139463 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000958_120 0.1204868631 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
14 Hb_000069_300 0.1210163694 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_001160_110 0.1244553146 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
16 Hb_001123_310 0.1249651 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
17 Hb_002045_090 0.129600025 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
18 Hb_003106_200 0.132822459 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
19 Hb_002942_120 0.1330832273 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
20 Hb_003160_070 0.1341740868 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_050 Hb_001141_050 Hb_001922_110 Hb_001922_110 Hb_001141_050--Hb_001922_110 Hb_000032_410 Hb_000032_410 Hb_001141_050--Hb_000032_410 Hb_000032_200 Hb_000032_200 Hb_001141_050--Hb_000032_200 Hb_006133_020 Hb_006133_020 Hb_001141_050--Hb_006133_020 Hb_000076_250 Hb_000076_250 Hb_001141_050--Hb_000076_250 Hb_003640_050 Hb_003640_050 Hb_001141_050--Hb_003640_050 Hb_000227_400 Hb_000227_400 Hb_001922_110--Hb_000227_400 Hb_000958_120 Hb_000958_120 Hb_001922_110--Hb_000958_120 Hb_000792_050 Hb_000792_050 Hb_001922_110--Hb_000792_050 Hb_010868_040 Hb_010868_040 Hb_001922_110--Hb_010868_040 Hb_008511_040 Hb_008511_040 Hb_001922_110--Hb_008511_040 Hb_005357_110 Hb_005357_110 Hb_000032_410--Hb_005357_110 Hb_000915_130 Hb_000915_130 Hb_000032_410--Hb_000915_130 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080 Hb_005511_130 Hb_005511_130 Hb_000032_410--Hb_005511_130 Hb_029253_010 Hb_029253_010 Hb_000032_410--Hb_029253_010 Hb_004730_020 Hb_004730_020 Hb_000032_410--Hb_004730_020 Hb_003106_200 Hb_003106_200 Hb_000032_200--Hb_003106_200 Hb_003430_040 Hb_003430_040 Hb_000032_200--Hb_003430_040 Hb_000347_140 Hb_000347_140 Hb_000032_200--Hb_000347_140 Hb_012787_030 Hb_012787_030 Hb_000032_200--Hb_012787_030 Hb_000732_030 Hb_000732_030 Hb_000032_200--Hb_000732_030 Hb_006133_020--Hb_008511_040 Hb_003020_190 Hb_003020_190 Hb_006133_020--Hb_003020_190 Hb_001862_050 Hb_001862_050 Hb_006133_020--Hb_001862_050 Hb_006133_020--Hb_000227_400 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_000388_080 Hb_000388_080 Hb_000076_250--Hb_000388_080 Hb_000076_250--Hb_003640_050 Hb_000076_250--Hb_000032_410 Hb_000996_080 Hb_000996_080 Hb_000076_250--Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000076_250--Hb_003020_250 Hb_000689_050 Hb_000689_050 Hb_000076_250--Hb_000689_050 Hb_003640_050--Hb_000996_080 Hb_005665_090 Hb_005665_090 Hb_003640_050--Hb_005665_090 Hb_005074_050 Hb_005074_050 Hb_003640_050--Hb_005074_050 Hb_003160_070 Hb_003160_070 Hb_003640_050--Hb_003160_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47738 4.03792 20.9155 9.93364 1.16758 1.39025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40064 1.03149 1.15793 2.40741 7.02578

CAGE analysis