Hb_003020_190

Information

Type -
Description -
Location Contig3020: 120256-123281
Sequence    

Annotation

kegg
ID cic:CICLE_v10029052mg
description hypothetical protein
nr
ID XP_012066954.1
description PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
swissprot
ID Q8VWZ8
description Methylsterol monooxygenase 2-2 OS=Arabidopsis thaliana GN=SMO2-2 PE=2 SV=1
trembl
ID A0A067L4U4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02933 PE=4 SV=1
Gene Ontology
ID GO:0016021
description methylsterol monooxygenase 2-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31850: 120296-124557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_190 0.0 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
2 Hb_010288_030 0.0933574858 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
3 Hb_071674_010 0.0939729931 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
4 Hb_006133_020 0.0953446279 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
5 Hb_001862_050 0.1029439768 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
6 Hb_000991_030 0.1116042345 - - PREDICTED: uncharacterized protein LOC105122436 [Populus euphratica]
7 Hb_007943_180 0.1143097888 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
8 Hb_047659_010 0.1156257591 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000230_190 0.1216416448 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
10 Hb_004129_060 0.1224199857 - - triacylglycerol lipase, putative [Ricinus communis]
11 Hb_018133_070 0.1296211559 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
12 Hb_008511_040 0.1298700645 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
13 Hb_001755_040 0.1318447239 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
14 Hb_001221_060 0.1329608422 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
15 Hb_000964_050 0.133387635 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
16 Hb_001269_060 0.1341302178 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
17 Hb_003109_010 0.1342497277 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
18 Hb_008053_030 0.1379365555 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
19 Hb_000190_220 0.138245561 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
20 Hb_007574_020 0.138597796 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_190 Hb_003020_190 Hb_010288_030 Hb_010288_030 Hb_003020_190--Hb_010288_030 Hb_071674_010 Hb_071674_010 Hb_003020_190--Hb_071674_010 Hb_006133_020 Hb_006133_020 Hb_003020_190--Hb_006133_020 Hb_001862_050 Hb_001862_050 Hb_003020_190--Hb_001862_050 Hb_000991_030 Hb_000991_030 Hb_003020_190--Hb_000991_030 Hb_007943_180 Hb_007943_180 Hb_003020_190--Hb_007943_180 Hb_010288_030--Hb_071674_010 Hb_000352_010 Hb_000352_010 Hb_010288_030--Hb_000352_010 Hb_011033_010 Hb_011033_010 Hb_010288_030--Hb_011033_010 Hb_001755_040 Hb_001755_040 Hb_010288_030--Hb_001755_040 Hb_007574_020 Hb_007574_020 Hb_010288_030--Hb_007574_020 Hb_000349_250 Hb_000349_250 Hb_071674_010--Hb_000349_250 Hb_000027_160 Hb_000027_160 Hb_071674_010--Hb_000027_160 Hb_071674_010--Hb_000991_030 Hb_001269_060 Hb_001269_060 Hb_071674_010--Hb_001269_060 Hb_008511_040 Hb_008511_040 Hb_006133_020--Hb_008511_040 Hb_006133_020--Hb_001862_050 Hb_000227_400 Hb_000227_400 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_002965_160 Hb_002965_160 Hb_001862_050--Hb_002965_160 Hb_004129_060 Hb_004129_060 Hb_001862_050--Hb_004129_060 Hb_000069_300 Hb_000069_300 Hb_001862_050--Hb_000069_300 Hb_047659_010 Hb_047659_010 Hb_001862_050--Hb_047659_010 Hb_000991_030--Hb_047659_010 Hb_000622_170 Hb_000622_170 Hb_000991_030--Hb_000622_170 Hb_000991_030--Hb_006133_020 Hb_000991_030--Hb_008511_040 Hb_004531_080 Hb_004531_080 Hb_007943_180--Hb_004531_080 Hb_003095_100 Hb_003095_100 Hb_007943_180--Hb_003095_100 Hb_001123_310 Hb_001123_310 Hb_007943_180--Hb_001123_310 Hb_003109_010 Hb_003109_010 Hb_007943_180--Hb_003109_010 Hb_000120_300 Hb_000120_300 Hb_007943_180--Hb_000120_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23861 2.51768 29.3478 14.9955 0.534177 0.465205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17462 0.593973 0.306484 1.79871 8.86389

CAGE analysis