Hb_000352_010

Information

Type -
Description -
Location Contig352: 23811-26896
Sequence    

Annotation

kegg
ID rcu:RCOM_1444060
description diphosphoinositol polyphosphate phosphohydrolase, putative
nr
ID XP_012067385.1
description PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
swissprot
ID Q52K88
description Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1
trembl
ID A0A067L0D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26895 PE=3 SV=1
Gene Ontology
ID GO:0052841
description nudix hydrolase mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36547: 24098-26907 , PASA_asmbl_36548: 24110-26907
cDNA
(Sanger)
(ID:Location)		 049_O09.ab1: 24098-25845

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_010 0.0 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
2 Hb_010288_030 0.0955272419 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
3 Hb_001680_020 0.1272282385 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]
4 Hb_001140_190 0.1315032568 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
5 Hb_071674_010 0.1391350516 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
6 Hb_004115_010 0.139391003 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
7 Hb_000139_040 0.1442286446 - - spermine synthase, putative [Ricinus communis]
8 Hb_001269_060 0.1452901516 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
9 Hb_003020_190 0.1453710932 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
10 Hb_047659_010 0.1482478434 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001519_090 0.1487291314 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
12 Hb_016297_010 0.1490435076 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
13 Hb_011033_010 0.1496612495 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_005977_080 0.1522666847 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
15 Hb_027684_010 0.1530364325 - - hypothetical protein RCOM_0504250 [Ricinus communis]
16 Hb_004447_050 0.1532372111 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
17 Hb_019973_010 0.154152007 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
18 Hb_000349_250 0.1547407588 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
19 Hb_006133_020 0.1560102497 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
20 Hb_001258_130 0.1561951395 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_010 Hb_000352_010 Hb_010288_030 Hb_010288_030 Hb_000352_010--Hb_010288_030 Hb_001680_020 Hb_001680_020 Hb_000352_010--Hb_001680_020 Hb_001140_190 Hb_001140_190 Hb_000352_010--Hb_001140_190 Hb_071674_010 Hb_071674_010 Hb_000352_010--Hb_071674_010 Hb_004115_010 Hb_004115_010 Hb_000352_010--Hb_004115_010 Hb_000139_040 Hb_000139_040 Hb_000352_010--Hb_000139_040 Hb_010288_030--Hb_071674_010 Hb_003020_190 Hb_003020_190 Hb_010288_030--Hb_003020_190 Hb_011033_010 Hb_011033_010 Hb_010288_030--Hb_011033_010 Hb_001755_040 Hb_001755_040 Hb_010288_030--Hb_001755_040 Hb_007574_020 Hb_007574_020 Hb_010288_030--Hb_007574_020 Hb_006501_080 Hb_006501_080 Hb_001680_020--Hb_006501_080 Hb_006620_030 Hb_006620_030 Hb_001680_020--Hb_006620_030 Hb_016297_010 Hb_016297_010 Hb_001680_020--Hb_016297_010 Hb_007007_100 Hb_007007_100 Hb_001680_020--Hb_007007_100 Hb_000890_170 Hb_000890_170 Hb_001680_020--Hb_000890_170 Hb_027684_010 Hb_027684_010 Hb_001680_020--Hb_027684_010 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_000438_160 Hb_000438_160 Hb_001140_190--Hb_000438_160 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_000071_060 Hb_000071_060 Hb_001140_190--Hb_000071_060 Hb_000331_170 Hb_000331_170 Hb_001140_190--Hb_000331_170 Hb_001817_040 Hb_001817_040 Hb_001140_190--Hb_001817_040 Hb_071674_010--Hb_003020_190 Hb_000349_250 Hb_000349_250 Hb_071674_010--Hb_000349_250 Hb_000027_160 Hb_000027_160 Hb_071674_010--Hb_000027_160 Hb_000991_030 Hb_000991_030 Hb_071674_010--Hb_000991_030 Hb_001269_060 Hb_001269_060 Hb_071674_010--Hb_001269_060 Hb_019973_010 Hb_019973_010 Hb_004115_010--Hb_019973_010 Hb_000120_340 Hb_000120_340 Hb_004115_010--Hb_000120_340 Hb_007313_030 Hb_007313_030 Hb_004115_010--Hb_007313_030 Hb_000086_470 Hb_000086_470 Hb_004115_010--Hb_000086_470 Hb_002518_040 Hb_002518_040 Hb_004115_010--Hb_002518_040 Hb_005890_020 Hb_005890_020 Hb_004115_010--Hb_005890_020 Hb_049846_010 Hb_049846_010 Hb_000139_040--Hb_049846_010 Hb_001258_130 Hb_001258_130 Hb_000139_040--Hb_001258_130 Hb_129956_010 Hb_129956_010 Hb_000139_040--Hb_129956_010 Hb_023640_020 Hb_023640_020 Hb_000139_040--Hb_023640_020 Hb_000031_240 Hb_000031_240 Hb_000139_040--Hb_000031_240 Hb_005357_140 Hb_005357_140 Hb_000139_040--Hb_005357_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71596 7.99639 86.0622 39.1105 0.372011 3.81691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14379 0.449837 1.02622 0.444151 32.2419

CAGE analysis