Hb_001140_190

Information

Type -
Description -
Location Contig1140: 215051-219277
Sequence    

Annotation

kegg
ID rcu:RCOM_1496020
description ATP binding protein, putative
nr
ID XP_012090264.1
description PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26115 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04195: 214643-214861 , PASA_asmbl_04196: 214893-216759 , PASA_asmbl_04197: 217037-217313 , PASA_asmbl_04199: 218862-219365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_190 0.0 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
2 Hb_001511_210 0.1033999656 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
3 Hb_000438_160 0.1176564169 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005276_140 0.1202761808 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000071_060 0.1221868479 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000331_170 0.1227514374 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
7 Hb_001817_040 0.1247596479 - - myosin XI, putative [Ricinus communis]
8 Hb_002374_470 0.1275213162 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
9 Hb_000031_240 0.1304143664 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_001258_130 0.1308409255 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
11 Hb_132840_190 0.1310783031 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
12 Hb_000352_010 0.1315032568 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
13 Hb_000932_110 0.1327462926 - - Root phototropism protein, putative [Ricinus communis]
14 Hb_001439_080 0.1333270464 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
15 Hb_000964_050 0.1338909471 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
16 Hb_000243_230 0.1357569364 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_004453_160 0.1385455874 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001504_210 0.1396931 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
19 Hb_008021_060 0.1400044319 - - Squalene monooxygenase, putative [Ricinus communis]
20 Hb_016297_010 0.1405592783 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]

Gene co-expression network

sample Hb_001140_190 Hb_001140_190 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_000438_160 Hb_000438_160 Hb_001140_190--Hb_000438_160 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_000071_060 Hb_000071_060 Hb_001140_190--Hb_000071_060 Hb_000331_170 Hb_000331_170 Hb_001140_190--Hb_000331_170 Hb_001817_040 Hb_001817_040 Hb_001140_190--Hb_001817_040 Hb_001258_130 Hb_001258_130 Hb_001511_210--Hb_001258_130 Hb_002301_120 Hb_002301_120 Hb_001511_210--Hb_002301_120 Hb_002066_100 Hb_002066_100 Hb_001511_210--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_001511_210--Hb_016297_010 Hb_000722_030 Hb_000722_030 Hb_001511_210--Hb_000722_030 Hb_002374_470 Hb_002374_470 Hb_001511_210--Hb_002374_470 Hb_000017_200 Hb_000017_200 Hb_000438_160--Hb_000017_200 Hb_000438_160--Hb_000331_170 Hb_000438_160--Hb_000071_060 Hb_000932_110 Hb_000932_110 Hb_000438_160--Hb_000932_110 Hb_001491_020 Hb_001491_020 Hb_000438_160--Hb_001491_020 Hb_005276_140--Hb_000331_170 Hb_132840_190 Hb_132840_190 Hb_005276_140--Hb_132840_190 Hb_000058_180 Hb_000058_180 Hb_005276_140--Hb_000058_180 Hb_000312_100 Hb_000312_100 Hb_005276_140--Hb_000312_100 Hb_001519_090 Hb_001519_090 Hb_005276_140--Hb_001519_090 Hb_007221_020 Hb_007221_020 Hb_005276_140--Hb_007221_020 Hb_000243_230 Hb_000243_230 Hb_000071_060--Hb_000243_230 Hb_008686_040 Hb_008686_040 Hb_000071_060--Hb_008686_040 Hb_000071_060--Hb_000331_170 Hb_000073_040 Hb_000073_040 Hb_000071_060--Hb_000073_040 Hb_000375_220 Hb_000375_220 Hb_000071_060--Hb_000375_220 Hb_000072_230 Hb_000072_230 Hb_000071_060--Hb_000072_230 Hb_000031_240 Hb_000031_240 Hb_000331_170--Hb_000031_240 Hb_031321_020 Hb_031321_020 Hb_000331_170--Hb_031321_020 Hb_000331_170--Hb_007221_020 Hb_019516_010 Hb_019516_010 Hb_000331_170--Hb_019516_010 Hb_004453_160 Hb_004453_160 Hb_000331_170--Hb_004453_160 Hb_001504_210 Hb_001504_210 Hb_001817_040--Hb_001504_210 Hb_000847_130 Hb_000847_130 Hb_001817_040--Hb_000847_130 Hb_000748_120 Hb_000748_120 Hb_001817_040--Hb_000748_120 Hb_001817_040--Hb_000071_060 Hb_004007_140 Hb_004007_140 Hb_001817_040--Hb_004007_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.160878 0.177837 9.68911 5.25663 0.0226168 0.139943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0529473 0.0833327 0.279351 0.128015 4.29587

CAGE analysis