Hb_000072_230

Information

Type -
Description -
Location Contig72: 363090-365978
Sequence    

Annotation

kegg
ID pop:POPTR_0004s10790g
description POPTRDRAFT_1076119; hypothetical protein
nr
ID XP_006384231.1
description hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
swissprot
ID Q9LFS4
description Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1
trembl
ID U5GEW0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s10790g PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nsp-interacting kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55602: 362904-366262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_230 0.0 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
2 Hb_000107_360 0.0856049144 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
3 Hb_000331_170 0.0947106966 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
4 Hb_000417_090 0.0971043358 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_000031_240 0.103870644 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_011310_170 0.1082573724 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
7 Hb_000964_050 0.1091744067 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
8 Hb_000028_080 0.1109611332 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
9 Hb_002818_060 0.1114130983 - - zinc finger protein, putative [Ricinus communis]
10 Hb_019516_010 0.1132126514 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
11 Hb_005977_080 0.1136680115 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
12 Hb_001349_050 0.1137045041 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
13 Hb_000134_130 0.1147649881 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
14 Hb_002894_060 0.1150496129 - - respiratory burst oxidase D [Manihot esculenta]
15 Hb_001623_250 0.1158224594 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
16 Hb_001007_020 0.1177325121 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
17 Hb_000071_060 0.1181975453 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000363_390 0.1198060315 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
19 Hb_005496_040 0.1207582996 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
20 Hb_000342_040 0.1211359765 - - pollen specific protein sf21, putative [Ricinus communis]

Gene co-expression network

sample Hb_000072_230 Hb_000072_230 Hb_000107_360 Hb_000107_360 Hb_000072_230--Hb_000107_360 Hb_000331_170 Hb_000331_170 Hb_000072_230--Hb_000331_170 Hb_000417_090 Hb_000417_090 Hb_000072_230--Hb_000417_090 Hb_000031_240 Hb_000031_240 Hb_000072_230--Hb_000031_240 Hb_011310_170 Hb_011310_170 Hb_000072_230--Hb_011310_170 Hb_000964_050 Hb_000964_050 Hb_000072_230--Hb_000964_050 Hb_000107_360--Hb_000964_050 Hb_006198_100 Hb_006198_100 Hb_000107_360--Hb_006198_100 Hb_002818_060 Hb_002818_060 Hb_000107_360--Hb_002818_060 Hb_000107_360--Hb_000417_090 Hb_005496_040 Hb_005496_040 Hb_000107_360--Hb_005496_040 Hb_000331_170--Hb_000031_240 Hb_031321_020 Hb_031321_020 Hb_000331_170--Hb_031321_020 Hb_007221_020 Hb_007221_020 Hb_000331_170--Hb_007221_020 Hb_005276_140 Hb_005276_140 Hb_000331_170--Hb_005276_140 Hb_019516_010 Hb_019516_010 Hb_000331_170--Hb_019516_010 Hb_004453_160 Hb_004453_160 Hb_000331_170--Hb_004453_160 Hb_000190_170 Hb_000190_170 Hb_000417_090--Hb_000190_170 Hb_000622_170 Hb_000622_170 Hb_000417_090--Hb_000622_170 Hb_004117_090 Hb_004117_090 Hb_000417_090--Hb_004117_090 Hb_000417_090--Hb_000331_170 Hb_004007_050 Hb_004007_050 Hb_000031_240--Hb_004007_050 Hb_001958_040 Hb_001958_040 Hb_000031_240--Hb_001958_040 Hb_000031_240--Hb_004453_160 Hb_000031_240--Hb_011310_170 Hb_005977_080 Hb_005977_080 Hb_000031_240--Hb_005977_080 Hb_011310_170--Hb_004007_050 Hb_004128_150 Hb_004128_150 Hb_011310_170--Hb_004128_150 Hb_023640_020 Hb_023640_020 Hb_011310_170--Hb_023640_020 Hb_011310_170--Hb_005977_080 Hb_011310_170--Hb_000331_170 Hb_001053_170 Hb_001053_170 Hb_000964_050--Hb_001053_170 Hb_002045_160 Hb_002045_160 Hb_000964_050--Hb_002045_160 Hb_003109_010 Hb_003109_010 Hb_000964_050--Hb_003109_010 Hb_001511_210 Hb_001511_210 Hb_000964_050--Hb_001511_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0338395 0.340003 9.72868 8.21162 0.0195528 0.0192395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.142442 0.205471 0.0707541 0.208172 2.99604

CAGE analysis