Hb_000622_170

Information

Type transcription factor
Description TF Family: ERF
Location Contig622: 147936-148847
Sequence    

Annotation

kegg
ID rcu:RCOM_0149580
description Ethylene-responsive transcription factor, putative
nr
ID XP_012083262.1
description PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
swissprot
ID Q9M374
description Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=1 SV=1
trembl
ID A0A067K8B3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14296 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_170 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
2 Hb_047659_010 0.1251834948 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000991_030 0.1263954654 - - PREDICTED: uncharacterized protein LOC105122436 [Populus euphratica]
4 Hb_008053_030 0.1284154442 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
5 Hb_004117_090 0.1335028746 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
6 Hb_000417_090 0.1445634733 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_071674_010 0.1446431549 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
8 Hb_001250_130 0.1528763354 - - hypothetical protein POPTR_0008s19280g [Populus trichocarpa]
9 Hb_000072_230 0.1538086693 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
10 Hb_010889_010 0.1567667089 - - PREDICTED: myosin-12 [Jatropha curcas]
11 Hb_010288_030 0.1578116561 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
12 Hb_001817_210 0.1601868406 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005496_040 0.1606320435 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
14 Hb_000342_040 0.16092694 - - pollen specific protein sf21, putative [Ricinus communis]
15 Hb_005977_080 0.1615229212 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
16 Hb_001544_050 0.1622930444 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
17 Hb_003020_190 0.162833215 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
18 Hb_000331_170 0.1628397208 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
19 Hb_006133_020 0.1639010452 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
20 Hb_033006_020 0.1649402969 - - Aspartate aminotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000622_170 Hb_000622_170 Hb_047659_010 Hb_047659_010 Hb_000622_170--Hb_047659_010 Hb_000991_030 Hb_000991_030 Hb_000622_170--Hb_000991_030 Hb_008053_030 Hb_008053_030 Hb_000622_170--Hb_008053_030 Hb_004117_090 Hb_004117_090 Hb_000622_170--Hb_004117_090 Hb_000417_090 Hb_000417_090 Hb_000622_170--Hb_000417_090 Hb_071674_010 Hb_071674_010 Hb_000622_170--Hb_071674_010 Hb_047659_010--Hb_000991_030 Hb_001862_050 Hb_001862_050 Hb_047659_010--Hb_001862_050 Hb_169893_010 Hb_169893_010 Hb_047659_010--Hb_169893_010 Hb_003020_190 Hb_003020_190 Hb_047659_010--Hb_003020_190 Hb_006133_020 Hb_006133_020 Hb_047659_010--Hb_006133_020 Hb_008686_010 Hb_008686_010 Hb_047659_010--Hb_008686_010 Hb_000991_030--Hb_003020_190 Hb_000991_030--Hb_071674_010 Hb_000991_030--Hb_006133_020 Hb_008511_040 Hb_008511_040 Hb_000991_030--Hb_008511_040 Hb_000465_410 Hb_000465_410 Hb_008053_030--Hb_000465_410 Hb_001544_050 Hb_001544_050 Hb_008053_030--Hb_001544_050 Hb_001377_120 Hb_001377_120 Hb_008053_030--Hb_001377_120 Hb_147378_010 Hb_147378_010 Hb_008053_030--Hb_147378_010 Hb_008053_030--Hb_006133_020 Hb_001268_160 Hb_001268_160 Hb_008053_030--Hb_001268_160 Hb_005496_040 Hb_005496_040 Hb_004117_090--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_004117_090--Hb_000342_040 Hb_001544_090 Hb_001544_090 Hb_004117_090--Hb_001544_090 Hb_005976_110 Hb_005976_110 Hb_004117_090--Hb_005976_110 Hb_000190_170 Hb_000190_170 Hb_004117_090--Hb_000190_170 Hb_000032_420 Hb_000032_420 Hb_004117_090--Hb_000032_420 Hb_000072_230 Hb_000072_230 Hb_000417_090--Hb_000072_230 Hb_000107_360 Hb_000107_360 Hb_000417_090--Hb_000107_360 Hb_000417_090--Hb_000190_170 Hb_000417_090--Hb_004117_090 Hb_000331_170 Hb_000331_170 Hb_000417_090--Hb_000331_170 Hb_010288_030 Hb_010288_030 Hb_071674_010--Hb_010288_030 Hb_071674_010--Hb_003020_190 Hb_000349_250 Hb_000349_250 Hb_071674_010--Hb_000349_250 Hb_000027_160 Hb_000027_160 Hb_071674_010--Hb_000027_160 Hb_001269_060 Hb_001269_060 Hb_071674_010--Hb_001269_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0496144 0.278227 2.28256 1.82312 0.0714132 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0569139 0.134275 0.0818509 0.0180427 1.00012

CAGE analysis