Hb_071674_010

Information

Type transcription factor
Description TF Family: WRKY
Location Contig71674: 1947-2700
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10950g
description POPTRDRAFT_653213; hypothetical protein
nr
ID XP_002309186.2
description hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
swissprot
ID Q9LY00
description Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1
trembl
ID B9HDJ4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s10950g PE=4 SV=2
Gene Ontology
ID GO:0003677
description probable wrky transcription factor 70

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071674_010 0.0 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
2 Hb_010288_030 0.0801940403 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
3 Hb_003020_190 0.0939729931 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
4 Hb_000349_250 0.1044010539 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
5 Hb_000027_160 0.1159128472 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
6 Hb_000991_030 0.1167039692 - - PREDICTED: uncharacterized protein LOC105122436 [Populus euphratica]
7 Hb_001269_060 0.1171533302 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
8 Hb_006133_020 0.1221124434 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
9 Hb_011033_010 0.1269941775 - - ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_047659_010 0.1320400606 - - conserved hypothetical protein [Ricinus communis]
11 Hb_033006_020 0.1320515039 - - Aspartate aminotransferase, putative [Ricinus communis]
12 Hb_001862_050 0.1329039399 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
13 Hb_000069_300 0.1337643775 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_000230_190 0.1357724556 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
15 Hb_008511_040 0.1365395404 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
16 Hb_000645_260 0.1377323243 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
17 Hb_001377_120 0.1378234382 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
18 Hb_000352_010 0.1391350516 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
19 Hb_000905_100 0.1393798623 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
20 Hb_001221_060 0.1406950506 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]

Gene co-expression network

sample Hb_071674_010 Hb_071674_010 Hb_010288_030 Hb_010288_030 Hb_071674_010--Hb_010288_030 Hb_003020_190 Hb_003020_190 Hb_071674_010--Hb_003020_190 Hb_000349_250 Hb_000349_250 Hb_071674_010--Hb_000349_250 Hb_000027_160 Hb_000027_160 Hb_071674_010--Hb_000027_160 Hb_000991_030 Hb_000991_030 Hb_071674_010--Hb_000991_030 Hb_001269_060 Hb_001269_060 Hb_071674_010--Hb_001269_060 Hb_010288_030--Hb_003020_190 Hb_000352_010 Hb_000352_010 Hb_010288_030--Hb_000352_010 Hb_011033_010 Hb_011033_010 Hb_010288_030--Hb_011033_010 Hb_001755_040 Hb_001755_040 Hb_010288_030--Hb_001755_040 Hb_007574_020 Hb_007574_020 Hb_010288_030--Hb_007574_020 Hb_006133_020 Hb_006133_020 Hb_003020_190--Hb_006133_020 Hb_001862_050 Hb_001862_050 Hb_003020_190--Hb_001862_050 Hb_003020_190--Hb_000991_030 Hb_007943_180 Hb_007943_180 Hb_003020_190--Hb_007943_180 Hb_000349_250--Hb_000027_160 Hb_019973_010 Hb_019973_010 Hb_000349_250--Hb_019973_010 Hb_002053_180 Hb_002053_180 Hb_000349_250--Hb_002053_180 Hb_004223_080 Hb_004223_080 Hb_000349_250--Hb_004223_080 Hb_001571_080 Hb_001571_080 Hb_000349_250--Hb_001571_080 Hb_024714_090 Hb_024714_090 Hb_000027_160--Hb_024714_090 Hb_000027_160--Hb_002053_180 Hb_000027_160--Hb_001571_080 Hb_000086_470 Hb_000086_470 Hb_000027_160--Hb_000086_470 Hb_000905_100 Hb_000905_100 Hb_000027_160--Hb_000905_100 Hb_047659_010 Hb_047659_010 Hb_000991_030--Hb_047659_010 Hb_000622_170 Hb_000622_170 Hb_000991_030--Hb_000622_170 Hb_000991_030--Hb_006133_020 Hb_008511_040 Hb_008511_040 Hb_000991_030--Hb_008511_040 Hb_001377_120 Hb_001377_120 Hb_001269_060--Hb_001377_120 Hb_121313_010 Hb_121313_010 Hb_001269_060--Hb_121313_010 Hb_000645_260 Hb_000645_260 Hb_001269_060--Hb_000645_260 Hb_000302_360 Hb_000302_360 Hb_001269_060--Hb_000302_360 Hb_004218_140 Hb_004218_140 Hb_001269_060--Hb_004218_140 Hb_027684_010 Hb_027684_010 Hb_001269_060--Hb_027684_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.78629 20.84 134.212 64.0126 2.44401 0.427931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63348 1.3566 3.02732 4.66622 40.9297

CAGE analysis