Hb_000991_030

Information

Type -
Description -
Location Contig991: 50613-51184
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08800g
description POPTRDRAFT_819178; hypothetical protein
nr
ID XP_011019836.1
description PREDICTED: uncharacterized protein LOC105122436 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HBT5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s08800g PE=4 SV=1
Gene Ontology
ID GO:0009535
description PREDICTED: uncharacterized protein LOC105122436

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000991_030 0.0 - - PREDICTED: uncharacterized protein LOC105122436 [Populus euphratica]
2 Hb_047659_010 0.1116026261 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003020_190 0.1116042345 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
4 Hb_071674_010 0.1167039692 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
5 Hb_000622_170 0.1263954654 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
6 Hb_006133_020 0.1407602091 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
7 Hb_008511_040 0.1428506353 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_001221_060 0.1433871882 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
9 Hb_000956_050 0.1456956453 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
10 Hb_001862_050 0.1479121531 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
11 Hb_004117_090 0.1493803976 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
12 Hb_010288_030 0.1532967926 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
13 Hb_000190_220 0.1539002863 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
14 Hb_008053_030 0.1595796609 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
15 Hb_000243_060 0.159701553 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
16 Hb_000230_190 0.1601200247 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
17 Hb_000027_160 0.160646265 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
18 Hb_001269_060 0.1611972617 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
19 Hb_005568_020 0.1612559066 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
20 Hb_001268_160 0.1616399374 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]

Gene co-expression network

sample Hb_000991_030 Hb_000991_030 Hb_047659_010 Hb_047659_010 Hb_000991_030--Hb_047659_010 Hb_003020_190 Hb_003020_190 Hb_000991_030--Hb_003020_190 Hb_071674_010 Hb_071674_010 Hb_000991_030--Hb_071674_010 Hb_000622_170 Hb_000622_170 Hb_000991_030--Hb_000622_170 Hb_006133_020 Hb_006133_020 Hb_000991_030--Hb_006133_020 Hb_008511_040 Hb_008511_040 Hb_000991_030--Hb_008511_040 Hb_001862_050 Hb_001862_050 Hb_047659_010--Hb_001862_050 Hb_169893_010 Hb_169893_010 Hb_047659_010--Hb_169893_010 Hb_047659_010--Hb_003020_190 Hb_047659_010--Hb_006133_020 Hb_008686_010 Hb_008686_010 Hb_047659_010--Hb_008686_010 Hb_010288_030 Hb_010288_030 Hb_003020_190--Hb_010288_030 Hb_003020_190--Hb_071674_010 Hb_003020_190--Hb_006133_020 Hb_003020_190--Hb_001862_050 Hb_007943_180 Hb_007943_180 Hb_003020_190--Hb_007943_180 Hb_071674_010--Hb_010288_030 Hb_000349_250 Hb_000349_250 Hb_071674_010--Hb_000349_250 Hb_000027_160 Hb_000027_160 Hb_071674_010--Hb_000027_160 Hb_001269_060 Hb_001269_060 Hb_071674_010--Hb_001269_060 Hb_000622_170--Hb_047659_010 Hb_008053_030 Hb_008053_030 Hb_000622_170--Hb_008053_030 Hb_004117_090 Hb_004117_090 Hb_000622_170--Hb_004117_090 Hb_000417_090 Hb_000417_090 Hb_000622_170--Hb_000417_090 Hb_000622_170--Hb_071674_010 Hb_006133_020--Hb_008511_040 Hb_006133_020--Hb_001862_050 Hb_000227_400 Hb_000227_400 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_000008_200 Hb_000008_200 Hb_008511_040--Hb_000008_200 Hb_000069_300 Hb_000069_300 Hb_008511_040--Hb_000069_300 Hb_008511_040--Hb_000227_400 Hb_001922_110 Hb_001922_110 Hb_008511_040--Hb_001922_110 Hb_001123_310 Hb_001123_310 Hb_008511_040--Hb_001123_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.680682 4.35701 34.4853 23.2332 1.0523 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.24615 1.02161 0.373923 1.52205 12.2172

CAGE analysis