Hb_000349_250

Information

Type -
Description -
Location Contig349: 255806-258545
Sequence    

Annotation

kegg
ID rcu:RCOM_1681450
description leucine-rich repeat transmembrane protein kinase, putative (EC:1.3.1.74)
nr
ID XP_012087063.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
swissprot
ID C0LGE4
description Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=2 SV=1
trembl
ID A0A067JZZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20726 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at1g12460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36322: 256959-258604 , PASA_asmbl_36323: 258665-258795
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_250 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
2 Hb_000027_160 0.075684372 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
3 Hb_019973_010 0.087624905 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
4 Hb_002053_180 0.1031180569 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
5 Hb_071674_010 0.1044010539 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
6 Hb_004223_080 0.1079789539 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_001571_080 0.1087403884 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
8 Hb_004202_030 0.1099553246 - - PREDICTED: uncharacterized protein LOC103449702 [Malus domestica]
9 Hb_006501_080 0.1100600398 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
10 Hb_000120_340 0.1116839322 - - Cucumisin precursor, putative [Ricinus communis]
11 Hb_004308_030 0.1119135694 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
12 Hb_001269_060 0.1122899223 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
13 Hb_000086_470 0.1124846143 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
14 Hb_007237_020 0.1154662691 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
15 Hb_005568_140 0.1199075419 - - ATP binding protein, putative [Ricinus communis]
16 Hb_029262_010 0.1247118709 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
17 Hb_000905_100 0.1263426885 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
18 Hb_000836_090 0.1299147207 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
19 Hb_004115_010 0.1300124898 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
20 Hb_024714_090 0.1300234881 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]

Gene co-expression network

sample Hb_000349_250 Hb_000349_250 Hb_000027_160 Hb_000027_160 Hb_000349_250--Hb_000027_160 Hb_019973_010 Hb_019973_010 Hb_000349_250--Hb_019973_010 Hb_002053_180 Hb_002053_180 Hb_000349_250--Hb_002053_180 Hb_071674_010 Hb_071674_010 Hb_000349_250--Hb_071674_010 Hb_004223_080 Hb_004223_080 Hb_000349_250--Hb_004223_080 Hb_001571_080 Hb_001571_080 Hb_000349_250--Hb_001571_080 Hb_024714_090 Hb_024714_090 Hb_000027_160--Hb_024714_090 Hb_000027_160--Hb_002053_180 Hb_000027_160--Hb_001571_080 Hb_000086_470 Hb_000086_470 Hb_000027_160--Hb_000086_470 Hb_000905_100 Hb_000905_100 Hb_000027_160--Hb_000905_100 Hb_000120_340 Hb_000120_340 Hb_019973_010--Hb_000120_340 Hb_004115_010 Hb_004115_010 Hb_019973_010--Hb_004115_010 Hb_019973_010--Hb_000086_470 Hb_004202_030 Hb_004202_030 Hb_019973_010--Hb_004202_030 Hb_003207_120 Hb_003207_120 Hb_019973_010--Hb_003207_120 Hb_000199_040 Hb_000199_040 Hb_002053_180--Hb_000199_040 Hb_000627_040 Hb_000627_040 Hb_002053_180--Hb_000627_040 Hb_007237_020 Hb_007237_020 Hb_002053_180--Hb_007237_020 Hb_006922_020 Hb_006922_020 Hb_002053_180--Hb_006922_020 Hb_000836_090 Hb_000836_090 Hb_002053_180--Hb_000836_090 Hb_002490_060 Hb_002490_060 Hb_002053_180--Hb_002490_060 Hb_010288_030 Hb_010288_030 Hb_071674_010--Hb_010288_030 Hb_003020_190 Hb_003020_190 Hb_071674_010--Hb_003020_190 Hb_071674_010--Hb_000027_160 Hb_000991_030 Hb_000991_030 Hb_071674_010--Hb_000991_030 Hb_001269_060 Hb_001269_060 Hb_071674_010--Hb_001269_060 Hb_000809_130 Hb_000809_130 Hb_004223_080--Hb_000809_130 Hb_000002_370 Hb_000002_370 Hb_004223_080--Hb_000002_370 Hb_001025_140 Hb_001025_140 Hb_004223_080--Hb_001025_140 Hb_000392_170 Hb_000392_170 Hb_004223_080--Hb_000392_170 Hb_001307_020 Hb_001307_020 Hb_004223_080--Hb_001307_020 Hb_005568_140 Hb_005568_140 Hb_001571_080--Hb_005568_140 Hb_001085_160 Hb_001085_160 Hb_001571_080--Hb_001085_160 Hb_002918_220 Hb_002918_220 Hb_001571_080--Hb_002918_220 Hb_001571_080--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_001571_080--Hb_027337_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167106 1.36371 8.38218 3.68653 0.00682853 0.00682637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0331084 0.0390796 0.0248634 0.346436 2.3567

CAGE analysis