Hb_004115_010

Information

Type transcription factor
Description TF Family: HB
Location Contig4115: 45985-49179
Sequence    

Annotation

kegg
ID rcu:RCOM_1456530
description homeobox protein, putative
nr
ID XP_012079215.1
description PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
swissprot
ID Q9FX31
description Homeobox-leucine zipper protein HDG11 OS=Arabidopsis thaliana GN=HDG11 PE=1 SV=1
trembl
ID A0A067LF10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17405 PE=4 SV=1
Gene Ontology
ID GO:0008289
description homeobox-leucine zipper protein hdg11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40704: 46008-47020 , PASA_asmbl_40705: 48669-48949
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004115_010 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
2 Hb_019973_010 0.0773937766 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
3 Hb_000120_340 0.0959508673 - - Cucumisin precursor, putative [Ricinus communis]
4 Hb_007313_030 0.1005915052 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
5 Hb_000086_470 0.109715068 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
6 Hb_002518_040 0.1123144024 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
7 Hb_005890_020 0.1140656406 - - putative plant disease resistance family protein [Populus trichocarpa]
8 Hb_001571_080 0.1152157058 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
9 Hb_001258_130 0.1206928571 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
10 Hb_027684_010 0.123711668 - - hypothetical protein RCOM_0504250 [Ricinus communis]
11 Hb_001511_210 0.126471718 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
12 Hb_002374_470 0.1276943305 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
13 Hb_001680_020 0.1283339693 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]
14 Hb_001053_170 0.1294930128 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
15 Hb_002301_400 0.1297143347 - - structural constituent of cell wall, putative [Ricinus communis]
16 Hb_007237_020 0.1299065766 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
17 Hb_000349_250 0.1300124898 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
18 Hb_003207_120 0.1306650025 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
19 Hb_001439_050 0.1307370233 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
20 Hb_011671_050 0.1311202645 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]

Gene co-expression network

sample Hb_004115_010 Hb_004115_010 Hb_019973_010 Hb_019973_010 Hb_004115_010--Hb_019973_010 Hb_000120_340 Hb_000120_340 Hb_004115_010--Hb_000120_340 Hb_007313_030 Hb_007313_030 Hb_004115_010--Hb_007313_030 Hb_000086_470 Hb_000086_470 Hb_004115_010--Hb_000086_470 Hb_002518_040 Hb_002518_040 Hb_004115_010--Hb_002518_040 Hb_005890_020 Hb_005890_020 Hb_004115_010--Hb_005890_020 Hb_019973_010--Hb_000120_340 Hb_019973_010--Hb_000086_470 Hb_000349_250 Hb_000349_250 Hb_019973_010--Hb_000349_250 Hb_004202_030 Hb_004202_030 Hb_019973_010--Hb_004202_030 Hb_003207_120 Hb_003207_120 Hb_019973_010--Hb_003207_120 Hb_003666_070 Hb_003666_070 Hb_000120_340--Hb_003666_070 Hb_000120_340--Hb_000086_470 Hb_007632_160 Hb_007632_160 Hb_000120_340--Hb_007632_160 Hb_011671_050 Hb_011671_050 Hb_000120_340--Hb_011671_050 Hb_007237_020 Hb_007237_020 Hb_000120_340--Hb_007237_020 Hb_007313_030--Hb_002518_040 Hb_108576_020 Hb_108576_020 Hb_007313_030--Hb_108576_020 Hb_007313_030--Hb_000086_470 Hb_003101_020 Hb_003101_020 Hb_007313_030--Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_007313_030--Hb_001439_050 Hb_062807_010 Hb_062807_010 Hb_007313_030--Hb_062807_010 Hb_000086_470--Hb_007237_020 Hb_000086_470--Hb_004202_030 Hb_000086_470--Hb_007632_160 Hb_000627_040 Hb_000627_040 Hb_000086_470--Hb_000627_040 Hb_000722_030 Hb_000722_030 Hb_002518_040--Hb_000722_030 Hb_002518_040--Hb_003101_020 Hb_002518_040--Hb_001439_050 Hb_001258_130 Hb_001258_130 Hb_002518_040--Hb_001258_130 Hb_027684_010 Hb_027684_010 Hb_002518_040--Hb_027684_010 Hb_005496_040 Hb_005496_040 Hb_005890_020--Hb_005496_040 Hb_001080_190 Hb_001080_190 Hb_005890_020--Hb_001080_190 Hb_002301_400 Hb_002301_400 Hb_005890_020--Hb_002301_400 Hb_001439_080 Hb_001439_080 Hb_005890_020--Hb_001439_080 Hb_017383_010 Hb_017383_010 Hb_005890_020--Hb_017383_010 Hb_000103_220 Hb_000103_220 Hb_005890_020--Hb_000103_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0325455 0.254932 3.05022 1.63779 0.0162913 0.0881913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.161651 0.925932

CAGE analysis