Hb_005890_020

Information

Type -
Description -
Location Contig5890: 29166-33607
Sequence    

Annotation

kegg
ID pop:POPTR_0019s15210g
description POPTRDRAFT_738987; putative plant disease resistance family protein
nr
ID XP_002325632.1
description putative plant disease resistance family protein [Populus trichocarpa]
swissprot
ID Q9LVM0
description Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=2 SV=1
trembl
ID B9INK3
description Putative plant disease resistance family protein OS=Populus trichocarpa GN=POPTR_0019s15210g PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable inactive receptor kinase at5g58300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50113: 29395-31518 , PASA_asmbl_50115: 31950-33627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005890_020 0.0 - - putative plant disease resistance family protein [Populus trichocarpa]
2 Hb_005496_040 0.0951391583 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
3 Hb_001080_190 0.1075563197 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
4 Hb_002301_400 0.1088188796 - - structural constituent of cell wall, putative [Ricinus communis]
5 Hb_001439_080 0.1106660935 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
6 Hb_017383_010 0.1109772409 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
7 Hb_000103_220 0.1116403786 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
8 Hb_000017_200 0.1134282014 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
9 Hb_004115_010 0.1140656406 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
10 Hb_007617_010 0.11466584 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
11 Hb_000032_420 0.116995673 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
12 Hb_000321_170 0.1176420325 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
13 Hb_000120_340 0.1177624044 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_000441_130 0.118050769 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
15 Hb_019973_010 0.1181218726 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
16 Hb_168918_010 0.1201264535 - - pectin acetylesterase, putative [Ricinus communis]
17 Hb_010449_010 0.1205941819 - - l-ascorbate oxidase, putative [Ricinus communis]
18 Hb_070498_010 0.120627557 - - receptor kinase, putative [Ricinus communis]
19 Hb_017434_010 0.1224872006 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
20 Hb_098315_060 0.1252518774 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_005890_020 Hb_005890_020 Hb_005496_040 Hb_005496_040 Hb_005890_020--Hb_005496_040 Hb_001080_190 Hb_001080_190 Hb_005890_020--Hb_001080_190 Hb_002301_400 Hb_002301_400 Hb_005890_020--Hb_002301_400 Hb_001439_080 Hb_001439_080 Hb_005890_020--Hb_001439_080 Hb_017383_010 Hb_017383_010 Hb_005890_020--Hb_017383_010 Hb_000103_220 Hb_000103_220 Hb_005890_020--Hb_000103_220 Hb_000342_040 Hb_000342_040 Hb_005496_040--Hb_000342_040 Hb_003750_120 Hb_003750_120 Hb_005496_040--Hb_003750_120 Hb_008686_010 Hb_008686_010 Hb_005496_040--Hb_008686_010 Hb_000032_420 Hb_000032_420 Hb_005496_040--Hb_000032_420 Hb_004117_090 Hb_004117_090 Hb_005496_040--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_005496_040--Hb_000003_750 Hb_007617_010 Hb_007617_010 Hb_001080_190--Hb_007617_010 Hb_001544_090 Hb_001544_090 Hb_001080_190--Hb_001544_090 Hb_001674_010 Hb_001674_010 Hb_001080_190--Hb_001674_010 Hb_001638_200 Hb_001638_200 Hb_001080_190--Hb_001638_200 Hb_017434_010 Hb_017434_010 Hb_001080_190--Hb_017434_010 Hb_000009_270 Hb_000009_270 Hb_001080_190--Hb_000009_270 Hb_070498_010 Hb_070498_010 Hb_002301_400--Hb_070498_010 Hb_128196_010 Hb_128196_010 Hb_002301_400--Hb_128196_010 Hb_012404_020 Hb_012404_020 Hb_002301_400--Hb_012404_020 Hb_001159_090 Hb_001159_090 Hb_002301_400--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002301_400--Hb_006196_030 Hb_001195_550 Hb_001195_550 Hb_002301_400--Hb_001195_550 Hb_001439_080--Hb_001638_200 Hb_001439_080--Hb_007617_010 Hb_001439_080--Hb_001080_190 Hb_009486_050 Hb_009486_050 Hb_001439_080--Hb_009486_050 Hb_000722_030 Hb_000722_030 Hb_001439_080--Hb_000722_030 Hb_000017_200 Hb_000017_200 Hb_001439_080--Hb_000017_200 Hb_010449_010 Hb_010449_010 Hb_017383_010--Hb_010449_010 Hb_017383_010--Hb_000032_420 Hb_017383_010--Hb_000103_220 Hb_000077_280 Hb_000077_280 Hb_017383_010--Hb_000077_280 Hb_017383_010--Hb_017434_010 Hb_001794_040 Hb_001794_040 Hb_017383_010--Hb_001794_040 Hb_000103_220--Hb_017434_010 Hb_152910_050 Hb_152910_050 Hb_000103_220--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_000103_220--Hb_098315_060 Hb_003376_020 Hb_003376_020 Hb_000103_220--Hb_003376_020 Hb_040852_010 Hb_040852_010 Hb_000103_220--Hb_040852_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.688654 2.64991 30.1942 26.108 0.820804 0.589643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0190053 0.0149548 0 1.01601 13.1395

CAGE analysis