Hb_000342_040

Information

Type -
Description -
Location Contig342: 16048-20487
Sequence    

Annotation

kegg
ID rcu:RCOM_0798100
description pollen specific protein sf21, putative
nr
ID XP_002516460.1
description pollen specific protein sf21, putative [Ricinus communis]
swissprot
ID O23969
description Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1
trembl
ID B9RRU1
description Pollen specific protein sf21, putative OS=Ricinus communis GN=RCOM_0798100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35728: 20088-20380 , PASA_asmbl_35730: 17104-17599 , PASA_asmbl_35731: 16074-20373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_040 0.0 - - pollen specific protein sf21, putative [Ricinus communis]
2 Hb_005496_040 0.076730076 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
3 Hb_002045_210 0.0921507801 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
4 Hb_004117_090 0.0942545104 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
5 Hb_000441_130 0.0950347527 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
6 Hb_000032_420 0.0956328902 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
7 Hb_001544_090 0.0984956476 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
8 Hb_007617_010 0.1017095054 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
9 Hb_003750_120 0.1022445004 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
10 Hb_001080_190 0.104020468 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
11 Hb_007811_020 0.1096343909 - - PREDICTED: expansin-A6 [Jatropha curcas]
12 Hb_000878_050 0.1105471492 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
13 Hb_003894_110 0.1117850332 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
14 Hb_098315_060 0.1146344601 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
15 Hb_005976_110 0.1152118684 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
16 Hb_004435_020 0.1156837086 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
17 Hb_003376_020 0.1159431477 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000077_280 0.1164237983 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_000028_080 0.1165009997 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
20 Hb_004223_060 0.1173659313 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]

Gene co-expression network

sample Hb_000342_040 Hb_000342_040 Hb_005496_040 Hb_005496_040 Hb_000342_040--Hb_005496_040 Hb_002045_210 Hb_002045_210 Hb_000342_040--Hb_002045_210 Hb_004117_090 Hb_004117_090 Hb_000342_040--Hb_004117_090 Hb_000441_130 Hb_000441_130 Hb_000342_040--Hb_000441_130 Hb_000032_420 Hb_000032_420 Hb_000342_040--Hb_000032_420 Hb_001544_090 Hb_001544_090 Hb_000342_040--Hb_001544_090 Hb_003750_120 Hb_003750_120 Hb_005496_040--Hb_003750_120 Hb_008686_010 Hb_008686_010 Hb_005496_040--Hb_008686_010 Hb_005496_040--Hb_000032_420 Hb_005496_040--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_005496_040--Hb_000003_750 Hb_001056_040 Hb_001056_040 Hb_002045_210--Hb_001056_040 Hb_002045_210--Hb_005496_040 Hb_000321_170 Hb_000321_170 Hb_002045_210--Hb_000321_170 Hb_002045_210--Hb_003750_120 Hb_000022_080 Hb_000022_080 Hb_002045_210--Hb_000022_080 Hb_004117_090--Hb_001544_090 Hb_005976_110 Hb_005976_110 Hb_004117_090--Hb_005976_110 Hb_000190_170 Hb_000190_170 Hb_004117_090--Hb_000190_170 Hb_004117_090--Hb_000032_420 Hb_000996_070 Hb_000996_070 Hb_000441_130--Hb_000996_070 Hb_000441_130--Hb_000032_420 Hb_017383_010 Hb_017383_010 Hb_000441_130--Hb_017383_010 Hb_010449_010 Hb_010449_010 Hb_000441_130--Hb_010449_010 Hb_004137_110 Hb_004137_110 Hb_000441_130--Hb_004137_110 Hb_000077_280 Hb_000077_280 Hb_000441_130--Hb_000077_280 Hb_000032_420--Hb_010449_010 Hb_000032_420--Hb_017383_010 Hb_000032_420--Hb_001544_090 Hb_000032_420--Hb_000996_070 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_001544_090--Hb_005976_110 Hb_001080_190 Hb_001080_190 Hb_001544_090--Hb_001080_190 Hb_001674_010 Hb_001674_010 Hb_001544_090--Hb_001674_010 Hb_001095_020 Hb_001095_020 Hb_001544_090--Hb_001095_020 Hb_007617_010 Hb_007617_010 Hb_001544_090--Hb_007617_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.994318 4.09192 36.6174 45.0878 0.0649822 0.0522011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.600728 0.795969 0 1.61862 17.6328

CAGE analysis