Hb_000069_300

Information

Type -
Description -
Location Contig69: 319303-320509
Sequence    

Annotation

kegg
ID rcu:RCOM_0717990
description Aspartic proteinase nepenthesin-1 precursor, putative
nr
ID XP_002523337.1
description Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
swissprot
ID Q9LS40
description Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1
trembl
ID B9SBG8
description Aspartic proteinase nepenthesin-1, putative OS=Ricinus communis GN=RCOM_0717990 PE=3 SV=1
Gene Ontology
ID GO:0009505
description aspartyl protease family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54201: 318619-320714
cDNA
(Sanger)
(ID:Location)		 007_L03.ab1: 318619-319439 , 043_E02.ab1: 319645-320323

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_300 0.0 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
2 Hb_001541_190 0.0991055313 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
3 Hb_008511_040 0.1033641829 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_001862_050 0.1102857247 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
5 Hb_006133_020 0.1158599322 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
6 Hb_001141_050 0.1210163694 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
7 Hb_001922_110 0.12209586 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000165_090 0.1253951715 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 2-like [Jatropha curcas]
9 Hb_000230_190 0.1273952113 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
10 Hb_091318_010 0.1320304807 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
11 Hb_002463_050 0.1323636563 - - conserved hypothetical protein [Ricinus communis]
12 Hb_071674_010 0.1337643775 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
13 Hb_002965_160 0.1351188159 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
14 Hb_003667_020 0.1366365079 - - conserved hypothetical protein 16 [Hevea brasiliensis]
15 Hb_000175_300 0.1404143748 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
16 Hb_003020_190 0.1419149258 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
17 Hb_000008_200 0.1432022677 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
18 Hb_000227_400 0.1441711981 - - lipoxygenase, putative [Ricinus communis]
19 Hb_001307_020 0.1453089991 - - electron carrier, putative [Ricinus communis]
20 Hb_000027_170 0.1500203025 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]

Gene co-expression network

sample Hb_000069_300 Hb_000069_300 Hb_001541_190 Hb_001541_190 Hb_000069_300--Hb_001541_190 Hb_008511_040 Hb_008511_040 Hb_000069_300--Hb_008511_040 Hb_001862_050 Hb_001862_050 Hb_000069_300--Hb_001862_050 Hb_006133_020 Hb_006133_020 Hb_000069_300--Hb_006133_020 Hb_001141_050 Hb_001141_050 Hb_000069_300--Hb_001141_050 Hb_001922_110 Hb_001922_110 Hb_000069_300--Hb_001922_110 Hb_001307_020 Hb_001307_020 Hb_001541_190--Hb_001307_020 Hb_003667_020 Hb_003667_020 Hb_001541_190--Hb_003667_020 Hb_000175_300 Hb_000175_300 Hb_001541_190--Hb_000175_300 Hb_001638_120 Hb_001638_120 Hb_001541_190--Hb_001638_120 Hb_004970_070 Hb_004970_070 Hb_001541_190--Hb_004970_070 Hb_008511_040--Hb_006133_020 Hb_000008_200 Hb_000008_200 Hb_008511_040--Hb_000008_200 Hb_000227_400 Hb_000227_400 Hb_008511_040--Hb_000227_400 Hb_008511_040--Hb_001922_110 Hb_001123_310 Hb_001123_310 Hb_008511_040--Hb_001123_310 Hb_002965_160 Hb_002965_160 Hb_001862_050--Hb_002965_160 Hb_003020_190 Hb_003020_190 Hb_001862_050--Hb_003020_190 Hb_004129_060 Hb_004129_060 Hb_001862_050--Hb_004129_060 Hb_001862_050--Hb_006133_020 Hb_047659_010 Hb_047659_010 Hb_001862_050--Hb_047659_010 Hb_006133_020--Hb_003020_190 Hb_006133_020--Hb_000227_400 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_001141_050--Hb_001922_110 Hb_000032_410 Hb_000032_410 Hb_001141_050--Hb_000032_410 Hb_000032_200 Hb_000032_200 Hb_001141_050--Hb_000032_200 Hb_000076_250 Hb_000076_250 Hb_001141_050--Hb_000076_250 Hb_003640_050 Hb_003640_050 Hb_001141_050--Hb_003640_050 Hb_001922_110--Hb_000227_400 Hb_000958_120 Hb_000958_120 Hb_001922_110--Hb_000958_120 Hb_000792_050 Hb_000792_050 Hb_001922_110--Hb_000792_050 Hb_010868_040 Hb_010868_040 Hb_001922_110--Hb_010868_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7645 68.7754 247.423 155.039 4.84595 7.81541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8218 8.76512 8.05374 16.4478 64.3544

CAGE analysis