Hb_000076_250

Information

Type -
Description -
Location Contig76: 180838-188602
Sequence    

Annotation

kegg
ID rcu:RCOM_0184790
description hypothetical protein
nr
ID XP_002522862.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CXF4
description TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1
trembl
ID B9SA43
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0184790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57256: 180224-181343 , PASA_asmbl_57257: 181578-187655 , PASA_asmbl_57259: 185077-185450 , PASA_asmbl_57260: 187192-187429
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000388_080 0.0904381277 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
3 Hb_003640_050 0.1029014287 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000032_410 0.1046676531 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
5 Hb_000996_080 0.1050222759 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
6 Hb_003020_250 0.1072862063 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
7 Hb_000689_050 0.10767492 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012180_060 0.1104186201 - - peptidase, putative [Ricinus communis]
9 Hb_000227_400 0.1116915151 - - lipoxygenase, putative [Ricinus communis]
10 Hb_001141_050 0.1152385444 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
11 Hb_004545_080 0.1182542827 - - protein with unknown function [Ricinus communis]
12 Hb_000357_070 0.118618477 - - -
13 Hb_007304_030 0.1189192098 - - PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
14 Hb_003175_070 0.1190941524 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
15 Hb_034579_020 0.1192019472 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004730_020 0.119431079 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
17 Hb_006130_020 0.1219284093 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
18 Hb_003752_090 0.1228223648 - - chitinase, putative [Ricinus communis]
19 Hb_001922_110 0.124339266 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002675_080 0.1246512016 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]

Gene co-expression network

sample Hb_000076_250 Hb_000076_250 Hb_000388_080 Hb_000388_080 Hb_000076_250--Hb_000388_080 Hb_003640_050 Hb_003640_050 Hb_000076_250--Hb_003640_050 Hb_000032_410 Hb_000032_410 Hb_000076_250--Hb_000032_410 Hb_000996_080 Hb_000996_080 Hb_000076_250--Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000076_250--Hb_003020_250 Hb_000689_050 Hb_000689_050 Hb_000076_250--Hb_000689_050 Hb_000357_070 Hb_000357_070 Hb_000388_080--Hb_000357_070 Hb_002028_110 Hb_002028_110 Hb_000388_080--Hb_002028_110 Hb_000322_030 Hb_000322_030 Hb_000388_080--Hb_000322_030 Hb_004994_330 Hb_004994_330 Hb_000388_080--Hb_004994_330 Hb_001579_300 Hb_001579_300 Hb_000388_080--Hb_001579_300 Hb_003640_050--Hb_000996_080 Hb_005665_090 Hb_005665_090 Hb_003640_050--Hb_005665_090 Hb_005074_050 Hb_005074_050 Hb_003640_050--Hb_005074_050 Hb_003160_070 Hb_003160_070 Hb_003640_050--Hb_003160_070 Hb_001141_050 Hb_001141_050 Hb_003640_050--Hb_001141_050 Hb_005357_110 Hb_005357_110 Hb_000032_410--Hb_005357_110 Hb_000915_130 Hb_000915_130 Hb_000032_410--Hb_000915_130 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080 Hb_005511_130 Hb_005511_130 Hb_000032_410--Hb_005511_130 Hb_029253_010 Hb_029253_010 Hb_000032_410--Hb_029253_010 Hb_004730_020 Hb_004730_020 Hb_000032_410--Hb_004730_020 Hb_000996_080--Hb_003020_250 Hb_000940_030 Hb_000940_030 Hb_000996_080--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000996_080--Hb_000327_200 Hb_000310_060 Hb_000310_060 Hb_000996_080--Hb_000310_060 Hb_000996_080--Hb_000689_050 Hb_001587_040 Hb_001587_040 Hb_000996_080--Hb_001587_040 Hb_004440_070 Hb_004440_070 Hb_003020_250--Hb_004440_070 Hb_003752_090 Hb_003752_090 Hb_003020_250--Hb_003752_090 Hb_007904_060 Hb_007904_060 Hb_003020_250--Hb_007904_060 Hb_003020_250--Hb_000327_200 Hb_003020_250--Hb_000940_030 Hb_003050_360 Hb_003050_360 Hb_000689_050--Hb_003050_360 Hb_005074_040 Hb_005074_040 Hb_000689_050--Hb_005074_040 Hb_014497_010 Hb_014497_010 Hb_000689_050--Hb_014497_010 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_000689_050--Hb_004545_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17733 2.35812 10.9843 7.94367 1.05124 1.38703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.9679 0.824816 0.472237 1.53755 7.35527

CAGE analysis