Hb_004440_070

Information

Type -
Description -
Location Contig4440: 87908-89524
Sequence    

Annotation

kegg
ID tcc:TCM_000355
description Tetratricopeptide repeat (TPR)-like superfamily protein
nr
ID XP_012079670.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Jatropha curcas]
swissprot
ID Q9FJY7
description Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
trembl
ID A0A067K696
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14968 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at5g66520

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42770: 88796-89712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004440_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Jatropha curcas]
2 Hb_003020_250 0.079013662 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
3 Hb_001663_130 0.1072829584 - - acyl-CoA thioesterase, putative [Ricinus communis]
4 Hb_003175_070 0.1073639791 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
5 Hb_000327_200 0.1123314397 - - glutathione-s-transferase omega, putative [Ricinus communis]
6 Hb_001021_210 0.1144911827 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_005665_090 0.1165327802 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
8 Hb_000594_060 0.1192478977 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
9 Hb_000996_080 0.1195328862 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
10 Hb_003752_090 0.1230042127 - - chitinase, putative [Ricinus communis]
11 Hb_000212_250 0.1232967447 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000032_410 0.1244646245 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
13 Hb_001160_110 0.1265864807 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
14 Hb_000327_330 0.1272869227 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000069_360 0.1272908477 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000076_250 0.1290824503 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003683_030 0.1299579702 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
18 Hb_000940_030 0.130676336 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
19 Hb_005527_060 0.1307578015 - - malic enzyme, putative [Ricinus communis]
20 Hb_002432_050 0.1327023146 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]

Gene co-expression network

sample Hb_004440_070 Hb_004440_070 Hb_003020_250 Hb_003020_250 Hb_004440_070--Hb_003020_250 Hb_001663_130 Hb_001663_130 Hb_004440_070--Hb_001663_130 Hb_003175_070 Hb_003175_070 Hb_004440_070--Hb_003175_070 Hb_000327_200 Hb_000327_200 Hb_004440_070--Hb_000327_200 Hb_001021_210 Hb_001021_210 Hb_004440_070--Hb_001021_210 Hb_005665_090 Hb_005665_090 Hb_004440_070--Hb_005665_090 Hb_003752_090 Hb_003752_090 Hb_003020_250--Hb_003752_090 Hb_000996_080 Hb_000996_080 Hb_003020_250--Hb_000996_080 Hb_007904_060 Hb_007904_060 Hb_003020_250--Hb_007904_060 Hb_003020_250--Hb_000327_200 Hb_000940_030 Hb_000940_030 Hb_003020_250--Hb_000940_030 Hb_000300_560 Hb_000300_560 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_011188_010 Hb_011188_010 Hb_001663_130--Hb_011188_010 Hb_000414_080 Hb_000414_080 Hb_003175_070--Hb_000414_080 Hb_000594_060 Hb_000594_060 Hb_003175_070--Hb_000594_060 Hb_003847_040 Hb_003847_040 Hb_003175_070--Hb_003847_040 Hb_003175_070--Hb_007594_080 Hb_002675_080 Hb_002675_080 Hb_003175_070--Hb_002675_080 Hb_004545_080 Hb_004545_080 Hb_003175_070--Hb_004545_080 Hb_000069_360 Hb_000069_360 Hb_000327_200--Hb_000069_360 Hb_000310_060 Hb_000310_060 Hb_000327_200--Hb_000310_060 Hb_000327_200--Hb_000996_080 Hb_001587_040 Hb_001587_040 Hb_000327_200--Hb_001587_040 Hb_000334_050 Hb_000334_050 Hb_000327_200--Hb_000334_050 Hb_003994_080 Hb_003994_080 Hb_001021_210--Hb_003994_080 Hb_010620_050 Hb_010620_050 Hb_001021_210--Hb_010620_050 Hb_001021_210--Hb_003752_090 Hb_005000_080 Hb_005000_080 Hb_001021_210--Hb_005000_080 Hb_002107_050 Hb_002107_050 Hb_001021_210--Hb_002107_050 Hb_001021_210--Hb_007594_080 Hb_012779_080 Hb_012779_080 Hb_005665_090--Hb_012779_080 Hb_009288_040 Hb_009288_040 Hb_005665_090--Hb_009288_040 Hb_001623_490 Hb_001623_490 Hb_005665_090--Hb_001623_490 Hb_000320_190 Hb_000320_190 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_005665_090--Hb_010620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02948 2.46481 7.62243 3.72304 0.98548 0.428136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.515804 1.21744 0.467218 1.41148 4.58882

CAGE analysis