Hb_001587_040

Information

Type -
Description -
Location Contig1587: 32814-40272
Sequence    

Annotation

kegg
ID rcu:RCOM_0816840
description inorganic pyrophosphatase, putative (EC:3.6.1.1)
nr
ID XP_012074547.1
description PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
swissprot
ID Q9LXC9
description Soluble inorganic pyrophosphatase 6, chloroplastic OS=Arabidopsis thaliana GN=PPA6 PE=1 SV=1
trembl
ID A0A067KI65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09893 PE=4 SV=1
Gene Ontology
ID GO:0005737
description soluble inorganic pyrophosphatase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001587_040 0.0 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
2 Hb_000310_060 0.0879256111 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
3 Hb_003398_040 0.0959425192 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
4 Hb_005527_060 0.0998127227 - - malic enzyme, putative [Ricinus communis]
5 Hb_000996_080 0.0999706693 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
6 Hb_000307_070 0.1011936729 - - protein kinase, putative [Ricinus communis]
7 Hb_001390_100 0.1014702004 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
8 Hb_000327_200 0.1029559619 - - glutathione-s-transferase omega, putative [Ricinus communis]
9 Hb_000270_280 0.1093081967 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_000589_170 0.1120228804 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
11 Hb_001009_140 0.1127217858 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
12 Hb_000011_560 0.112911865 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
13 Hb_003020_250 0.1141920701 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
14 Hb_013405_070 0.115507874 - - ferric-chelate reductase, putative [Ricinus communis]
15 Hb_000820_140 0.1162594305 - - histone H4 [Zea mays]
16 Hb_000566_010 0.1199544424 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
17 Hb_003752_090 0.1210123852 - - chitinase, putative [Ricinus communis]
18 Hb_101334_020 0.1225769839 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
19 Hb_005784_030 0.1232025333 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
20 Hb_003680_090 0.1235734735 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001587_040 Hb_001587_040 Hb_000310_060 Hb_000310_060 Hb_001587_040--Hb_000310_060 Hb_003398_040 Hb_003398_040 Hb_001587_040--Hb_003398_040 Hb_005527_060 Hb_005527_060 Hb_001587_040--Hb_005527_060 Hb_000996_080 Hb_000996_080 Hb_001587_040--Hb_000996_080 Hb_000307_070 Hb_000307_070 Hb_001587_040--Hb_000307_070 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100 Hb_000270_280 Hb_000270_280 Hb_000310_060--Hb_000270_280 Hb_000310_060--Hb_003398_040 Hb_000940_030 Hb_000940_030 Hb_000310_060--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000310_060--Hb_000327_200 Hb_000310_060--Hb_005527_060 Hb_000009_420 Hb_000009_420 Hb_003398_040--Hb_000009_420 Hb_003398_040--Hb_005527_060 Hb_010868_040 Hb_010868_040 Hb_003398_040--Hb_010868_040 Hb_000753_110 Hb_000753_110 Hb_003398_040--Hb_000753_110 Hb_002432_050 Hb_002432_050 Hb_005527_060--Hb_002432_050 Hb_000589_170 Hb_000589_170 Hb_005527_060--Hb_000589_170 Hb_000011_560 Hb_000011_560 Hb_005527_060--Hb_000011_560 Hb_003020_250 Hb_003020_250 Hb_000996_080--Hb_003020_250 Hb_000996_080--Hb_000940_030 Hb_000996_080--Hb_000327_200 Hb_000996_080--Hb_000310_060 Hb_000689_050 Hb_000689_050 Hb_000996_080--Hb_000689_050 Hb_000820_140 Hb_000820_140 Hb_000307_070--Hb_000820_140 Hb_000334_050 Hb_000334_050 Hb_000307_070--Hb_000334_050 Hb_000189_130 Hb_000189_130 Hb_000307_070--Hb_000189_130 Hb_005917_020 Hb_005917_020 Hb_000307_070--Hb_005917_020 Hb_000307_070--Hb_000310_060 Hb_101334_020 Hb_101334_020 Hb_001390_100--Hb_101334_020 Hb_000116_250 Hb_000116_250 Hb_001390_100--Hb_000116_250 Hb_025194_090 Hb_025194_090 Hb_001390_100--Hb_025194_090 Hb_000094_100 Hb_000094_100 Hb_001390_100--Hb_000094_100 Hb_000496_130 Hb_000496_130 Hb_001390_100--Hb_000496_130 Hb_138585_030 Hb_138585_030 Hb_001390_100--Hb_138585_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3094 6.96845 38.9985 17.7573 1.93032 2.50087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.93236 8.06311 4.23831 11.2234 24.9636

CAGE analysis