Hb_000189_130

Information

Type -
Description -
Location Contig189: 140261-150596
Sequence    

Annotation

kegg
ID rcu:RCOM_0484630
description hypothetical protein
nr
ID XP_012089257.1
description PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
swissprot
ID Q9XH46
description Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum GN=TATA PE=1 SV=1
trembl
ID A0A067JIF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23495 PE=3 SV=1
Gene Ontology
ID GO:0009941
description sec-independent protein translocase protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18653: 140331-150651
cDNA
(Sanger)
(ID:Location)		 027_F18.ab1: 140331-150651

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_130 0.0 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
2 Hb_000307_070 0.1129255846 - - protein kinase, putative [Ricinus communis]
3 Hb_001009_140 0.1160111062 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
4 Hb_000331_420 0.1160462769 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
5 Hb_000589_170 0.124003284 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
6 Hb_001587_040 0.1247419653 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
7 Hb_001322_230 0.1261368781 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
8 Hb_008375_030 0.1271239084 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
9 Hb_068194_010 0.1273354901 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
10 Hb_000820_140 0.1305563921 - - histone H4 [Zea mays]
11 Hb_005214_170 0.1423830185 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
12 Hb_086122_010 0.1432891069 - - PREDICTED: immunoglobulin-like domain-containing receptor 1 [Jatropha curcas]
13 Hb_005656_170 0.1439207171 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
14 Hb_017193_010 0.1446673584 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
15 Hb_000212_250 0.144786986 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000331_570 0.1464132863 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
17 Hb_006588_190 0.1466982881 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
18 Hb_006445_020 0.1470247074 - - hypothetical protein L484_026741 [Morus notabilis]
19 Hb_000152_180 0.1483921431 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
20 Hb_011476_030 0.1489351296 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_130 Hb_000189_130 Hb_000307_070 Hb_000307_070 Hb_000189_130--Hb_000307_070 Hb_001009_140 Hb_001009_140 Hb_000189_130--Hb_001009_140 Hb_000331_420 Hb_000331_420 Hb_000189_130--Hb_000331_420 Hb_000589_170 Hb_000589_170 Hb_000189_130--Hb_000589_170 Hb_001587_040 Hb_001587_040 Hb_000189_130--Hb_001587_040 Hb_001322_230 Hb_001322_230 Hb_000189_130--Hb_001322_230 Hb_000307_070--Hb_001587_040 Hb_000820_140 Hb_000820_140 Hb_000307_070--Hb_000820_140 Hb_000334_050 Hb_000334_050 Hb_000307_070--Hb_000334_050 Hb_005917_020 Hb_005917_020 Hb_000307_070--Hb_005917_020 Hb_000310_060 Hb_000310_060 Hb_000307_070--Hb_000310_060 Hb_005665_090 Hb_005665_090 Hb_001009_140--Hb_005665_090 Hb_101334_020 Hb_101334_020 Hb_001009_140--Hb_101334_020 Hb_001009_140--Hb_000589_170 Hb_000029_400 Hb_000029_400 Hb_001009_140--Hb_000029_400 Hb_006588_190 Hb_006588_190 Hb_001009_140--Hb_006588_190 Hb_000116_250 Hb_000116_250 Hb_001009_140--Hb_000116_250 Hb_000331_570 Hb_000331_570 Hb_000331_420--Hb_000331_570 Hb_005214_170 Hb_005214_170 Hb_000331_420--Hb_005214_170 Hb_009851_010 Hb_009851_010 Hb_000331_420--Hb_009851_010 Hb_002871_040 Hb_002871_040 Hb_000331_420--Hb_002871_040 Hb_000152_180 Hb_000152_180 Hb_000331_420--Hb_000152_180 Hb_000098_180 Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_013405_070 Hb_013405_070 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_001587_040--Hb_000310_060 Hb_003398_040 Hb_003398_040 Hb_001587_040--Hb_003398_040 Hb_005527_060 Hb_005527_060 Hb_001587_040--Hb_005527_060 Hb_000996_080 Hb_000996_080 Hb_001587_040--Hb_000996_080 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100 Hb_001322_230--Hb_000820_140 Hb_002053_010 Hb_002053_010 Hb_001322_230--Hb_002053_010 Hb_001711_120 Hb_001711_120 Hb_001322_230--Hb_001711_120 Hb_003602_060 Hb_003602_060 Hb_001322_230--Hb_003602_060 Hb_000560_040 Hb_000560_040 Hb_001322_230--Hb_000560_040 Hb_001863_070 Hb_001863_070 Hb_001322_230--Hb_001863_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65819 4.42756 19.8567 6.88482 0.77038 1.99823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.8004 5.78943 1.65998 6.53574 9.75634

CAGE analysis