Hb_005917_020

Information

Type -
Description -
Location Contig5917: 21817-23512
Sequence    

Annotation

kegg
ID tcc:TCM_004181
description Winged-helix DNA-binding transcription factor family protein
nr
ID XP_007050394.1
description Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
swissprot
ID P26569
description Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1
trembl
ID A0A061DR21
description Winged-helix DNA-binding transcription factor family protein OS=Theobroma cacao GN=TCM_004181 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50267: 21813-23260
cDNA
(Sanger)
(ID:Location)		 001_C21.ab1: 21813-22656 , 024_C18.ab1: 21819-22533 , 043_F03.ab1: 21813-22640 , 043_I02.ab1: 21813-22631 , 044_E02.ab1: 21819-22662 , 045_F09.ab1: 21813-22651 , 052_D11.ab1: 21819-22658

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005917_020 0.0 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
2 Hb_003680_090 0.085344847 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
3 Hb_004502_010 0.1036431906 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
4 Hb_011114_020 0.1122468169 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
5 Hb_000307_070 0.1170020359 - - protein kinase, putative [Ricinus communis]
6 Hb_001959_060 0.1232530034 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
7 Hb_002811_310 0.124499722 - - hypothetical protein VITISV_025505 [Vitis vinifera]
8 Hb_000270_280 0.1285517112 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_000402_020 0.1316516095 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_025194_090 0.1325691222 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
11 Hb_000820_140 0.1348412318 - - histone H4 [Zea mays]
12 Hb_004162_270 0.1350422489 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
13 Hb_001390_100 0.1350562474 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
14 Hb_001587_040 0.1359001382 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
15 Hb_005784_030 0.1368968003 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
16 Hb_004648_030 0.1374075427 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
17 Hb_011476_030 0.1397187873 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
18 Hb_005618_080 0.14239614 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
19 Hb_148146_010 0.144934961 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
20 Hb_003029_020 0.1453436089 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_005917_020 Hb_005917_020 Hb_003680_090 Hb_003680_090 Hb_005917_020--Hb_003680_090 Hb_004502_010 Hb_004502_010 Hb_005917_020--Hb_004502_010 Hb_011114_020 Hb_011114_020 Hb_005917_020--Hb_011114_020 Hb_000307_070 Hb_000307_070 Hb_005917_020--Hb_000307_070 Hb_001959_060 Hb_001959_060 Hb_005917_020--Hb_001959_060 Hb_002811_310 Hb_002811_310 Hb_005917_020--Hb_002811_310 Hb_000270_280 Hb_000270_280 Hb_003680_090--Hb_000270_280 Hb_003680_090--Hb_002811_310 Hb_004162_270 Hb_004162_270 Hb_003680_090--Hb_004162_270 Hb_001863_180 Hb_001863_180 Hb_003680_090--Hb_001863_180 Hb_003053_070 Hb_003053_070 Hb_003680_090--Hb_003053_070 Hb_025194_090 Hb_025194_090 Hb_004502_010--Hb_025194_090 Hb_003029_020 Hb_003029_020 Hb_004502_010--Hb_003029_020 Hb_005116_100 Hb_005116_100 Hb_004502_010--Hb_005116_100 Hb_005618_080 Hb_005618_080 Hb_004502_010--Hb_005618_080 Hb_000402_020 Hb_000402_020 Hb_004502_010--Hb_000402_020 Hb_000368_120 Hb_000368_120 Hb_011114_020--Hb_000368_120 Hb_002411_100 Hb_002411_100 Hb_011114_020--Hb_002411_100 Hb_000005_130 Hb_000005_130 Hb_011114_020--Hb_000005_130 Hb_000442_070 Hb_000442_070 Hb_011114_020--Hb_000442_070 Hb_006620_070 Hb_006620_070 Hb_011114_020--Hb_006620_070 Hb_000146_030 Hb_000146_030 Hb_011114_020--Hb_000146_030 Hb_001587_040 Hb_001587_040 Hb_000307_070--Hb_001587_040 Hb_000820_140 Hb_000820_140 Hb_000307_070--Hb_000820_140 Hb_000334_050 Hb_000334_050 Hb_000307_070--Hb_000334_050 Hb_000189_130 Hb_000189_130 Hb_000307_070--Hb_000189_130 Hb_000310_060 Hb_000310_060 Hb_000307_070--Hb_000310_060 Hb_006829_080 Hb_006829_080 Hb_001959_060--Hb_006829_080 Hb_001959_060--Hb_005618_080 Hb_000684_430 Hb_000684_430 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_001959_060--Hb_000402_020 Hb_027298_020 Hb_027298_020 Hb_002811_310--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_002811_310--Hb_000703_070 Hb_005563_040 Hb_005563_040 Hb_002811_310--Hb_005563_040 Hb_010557_010 Hb_010557_010 Hb_002811_310--Hb_010557_010 Hb_002811_310--Hb_002411_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3225 56.1121 317.187 71.4768 12.6592 16.8723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.5364 83.8465 32.648 89.8422 318.878

CAGE analysis