Hb_000442_070

Information

Type -
Description -
Location Contig442: 91084-96644
Sequence    

Annotation

kegg
ID vvi:100253544
description uncharacterized LOC100253544
nr
ID XP_012086552.1
description PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8A4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01186 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42695: 91535-96508 , PASA_asmbl_42696: 94798-95209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_070 0.0 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
2 Hb_010557_010 0.0985640705 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
3 Hb_005563_040 0.1010496575 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
4 Hb_011114_020 0.1024333693 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
5 Hb_002411_100 0.1026993513 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
6 Hb_006620_070 0.1048778517 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
7 Hb_003948_020 0.1054474011 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
8 Hb_004459_060 0.108712854 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
9 Hb_015175_040 0.1100717898 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001405_090 0.1122617787 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
11 Hb_007694_060 0.1146148636 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
12 Hb_002477_020 0.1154544701 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
13 Hb_000803_170 0.1174645716 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
14 Hb_000368_120 0.1192301432 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
15 Hb_005488_160 0.119645223 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
16 Hb_009296_030 0.1209858489 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
17 Hb_000703_070 0.1287839143 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
18 Hb_000032_390 0.1300269446 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
19 Hb_000089_140 0.13047565 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
20 Hb_002232_380 0.1307506928 - - malate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000442_070 Hb_000442_070 Hb_010557_010 Hb_010557_010 Hb_000442_070--Hb_010557_010 Hb_005563_040 Hb_005563_040 Hb_000442_070--Hb_005563_040 Hb_011114_020 Hb_011114_020 Hb_000442_070--Hb_011114_020 Hb_002411_100 Hb_002411_100 Hb_000442_070--Hb_002411_100 Hb_006620_070 Hb_006620_070 Hb_000442_070--Hb_006620_070 Hb_003948_020 Hb_003948_020 Hb_000442_070--Hb_003948_020 Hb_010557_010--Hb_002411_100 Hb_002811_250 Hb_002811_250 Hb_010557_010--Hb_002811_250 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_005563_040--Hb_000803_170 Hb_005488_160 Hb_005488_160 Hb_005563_040--Hb_005488_160 Hb_005563_040--Hb_002411_100 Hb_001579_280 Hb_001579_280 Hb_005563_040--Hb_001579_280 Hb_005563_040--Hb_010557_010 Hb_000368_120 Hb_000368_120 Hb_011114_020--Hb_000368_120 Hb_011114_020--Hb_002411_100 Hb_000005_130 Hb_000005_130 Hb_011114_020--Hb_000005_130 Hb_011114_020--Hb_006620_070 Hb_000146_030 Hb_000146_030 Hb_011114_020--Hb_000146_030 Hb_002411_100--Hb_003948_020 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_006620_070--Hb_004459_060 Hb_001405_090 Hb_001405_090 Hb_006620_070--Hb_001405_090 Hb_007694_060 Hb_007694_060 Hb_006620_070--Hb_007694_060 Hb_006620_070--Hb_000005_130 Hb_006620_070--Hb_002411_100 Hb_003948_020--Hb_000045_050 Hb_003664_030 Hb_003664_030 Hb_003948_020--Hb_003664_030 Hb_003948_020--Hb_010557_010 Hb_000061_250 Hb_000061_250 Hb_003948_020--Hb_000061_250 Hb_000264_280 Hb_000264_280 Hb_003948_020--Hb_000264_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.84888 4.81511 40.809 14.2965 1.00256 2.56043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.84456 8.72466 3.88067 1.88936 60.5887

CAGE analysis