Hb_001579_280

Information

Type -
Description -
Location Contig1579: 199194-202636
Sequence    

Annotation

kegg
ID rcu:RCOM_0527990
description Naphthoate synthase, putative (EC:4.1.3.36)
nr
ID XP_012085403.1
description PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Jatropha curcas]
swissprot
ID Q8GYN9
description 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal OS=Arabidopsis thaliana GN=MENB PE=1 SV=2
trembl
ID B9SH93
description Naphthoate synthase, putative OS=Ricinus communis GN=RCOM_0527990 PE=3 SV=1
Gene Ontology
ID GO:0008935
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13842: 199256-202582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_280 0.0 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Jatropha curcas]
2 Hb_000803_170 0.0868493368 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
3 Hb_000019_080 0.1013543163 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
4 Hb_005563_040 0.101601289 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
5 Hb_004837_100 0.1083687579 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
6 Hb_000089_140 0.1335660131 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
7 Hb_002811_310 0.1363210304 - - hypothetical protein VITISV_025505 [Vitis vinifera]
8 Hb_134949_010 0.1369586796 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
9 Hb_010557_010 0.1390149927 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
10 Hb_002811_250 0.1409263738 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
11 Hb_003053_070 0.1429486783 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
12 Hb_027298_020 0.145648497 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
13 Hb_000193_220 0.1482260644 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
14 Hb_000108_250 0.148383637 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_000352_280 0.1506384643 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
16 Hb_005488_160 0.151652632 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
17 Hb_058620_080 0.1521575888 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
18 Hb_010098_040 0.1536124938 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
19 Hb_002411_100 0.1547409743 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
20 Hb_024399_020 0.1549417427 - - electron transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001579_280 Hb_001579_280 Hb_000803_170 Hb_000803_170 Hb_001579_280--Hb_000803_170 Hb_000019_080 Hb_000019_080 Hb_001579_280--Hb_000019_080 Hb_005563_040 Hb_005563_040 Hb_001579_280--Hb_005563_040 Hb_004837_100 Hb_004837_100 Hb_001579_280--Hb_004837_100 Hb_000089_140 Hb_000089_140 Hb_001579_280--Hb_000089_140 Hb_002811_310 Hb_002811_310 Hb_001579_280--Hb_002811_310 Hb_002811_250 Hb_002811_250 Hb_000803_170--Hb_002811_250 Hb_010557_010 Hb_010557_010 Hb_000803_170--Hb_010557_010 Hb_000803_170--Hb_005563_040 Hb_000193_220 Hb_000193_220 Hb_000803_170--Hb_000193_220 Hb_000803_170--Hb_000089_140 Hb_000019_080--Hb_004837_100 Hb_000352_280 Hb_000352_280 Hb_000019_080--Hb_000352_280 Hb_000019_080--Hb_000803_170 Hb_172426_060 Hb_172426_060 Hb_000019_080--Hb_172426_060 Hb_000019_080--Hb_010557_010 Hb_005488_160 Hb_005488_160 Hb_005563_040--Hb_005488_160 Hb_002411_100 Hb_002411_100 Hb_005563_040--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_005563_040--Hb_000442_070 Hb_005563_040--Hb_010557_010 Hb_003053_070 Hb_003053_070 Hb_004837_100--Hb_003053_070 Hb_000684_200 Hb_000684_200 Hb_004837_100--Hb_000684_200 Hb_000395_010 Hb_000395_010 Hb_004837_100--Hb_000395_010 Hb_004162_270 Hb_004162_270 Hb_004837_100--Hb_004162_270 Hb_000317_180 Hb_000317_180 Hb_000089_140--Hb_000317_180 Hb_000089_140--Hb_002811_250 Hb_000856_280 Hb_000856_280 Hb_000089_140--Hb_000856_280 Hb_000089_140--Hb_010557_010 Hb_058620_080 Hb_058620_080 Hb_000089_140--Hb_058620_080 Hb_003680_090 Hb_003680_090 Hb_002811_310--Hb_003680_090 Hb_027298_020 Hb_027298_020 Hb_002811_310--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_002811_310--Hb_000703_070 Hb_002811_310--Hb_005563_040 Hb_002811_310--Hb_010557_010 Hb_002811_310--Hb_002411_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.483495 1.23998 14.7081 4.45232 0.707691 0.468594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66023 1.03506 3.1482 3.26602 24.9509

CAGE analysis