Hb_004837_100

Information

Type -
Description -
Location Contig4837: 121375-125327
Sequence    

Annotation

kegg
ID rcu:RCOM_1578230
description 2-oxoglutarate/malate translocator, chloroplast precursor, putative
nr
ID XP_012089998.1
description PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LXV3
description Dicarboxylate transporter 1, chloroplastic OS=Arabidopsis thaliana GN=DIT1 PE=1 SV=1
trembl
ID A0A067JQ17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25921 PE=4 SV=1
Gene Ontology
ID GO:0005739
description dicarboxylate transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44868: 121430-125279
cDNA
(Sanger)
(ID:Location)		 010_H09.ab1: 121430-122103

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_100 0.0 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
2 Hb_000019_080 0.0790713474 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
3 Hb_003053_070 0.0933955907 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
4 Hb_000684_200 0.0941492254 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_000395_010 0.1070311411 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
6 Hb_001579_280 0.1083687579 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Jatropha curcas]
7 Hb_004162_270 0.1178761883 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000803_170 0.1181833226 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
9 Hb_000108_250 0.1215545044 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Jatropha curcas]
10 Hb_010557_010 0.1233897259 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
11 Hb_005784_030 0.1246345424 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
12 Hb_002811_310 0.1252262558 - - hypothetical protein VITISV_025505 [Vitis vinifera]
13 Hb_000352_280 0.1267895985 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
14 Hb_003680_090 0.1306309256 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
15 Hb_005563_040 0.1323193433 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
16 Hb_002811_250 0.1328526754 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
17 Hb_010098_040 0.1333660466 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
18 Hb_002636_030 0.1352348573 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
19 Hb_142663_020 0.1354530022 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
20 Hb_005181_120 0.1400453471 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004837_100 Hb_004837_100 Hb_000019_080 Hb_000019_080 Hb_004837_100--Hb_000019_080 Hb_003053_070 Hb_003053_070 Hb_004837_100--Hb_003053_070 Hb_000684_200 Hb_000684_200 Hb_004837_100--Hb_000684_200 Hb_000395_010 Hb_000395_010 Hb_004837_100--Hb_000395_010 Hb_001579_280 Hb_001579_280 Hb_004837_100--Hb_001579_280 Hb_004162_270 Hb_004162_270 Hb_004837_100--Hb_004162_270 Hb_000352_280 Hb_000352_280 Hb_000019_080--Hb_000352_280 Hb_000803_170 Hb_000803_170 Hb_000019_080--Hb_000803_170 Hb_172426_060 Hb_172426_060 Hb_000019_080--Hb_172426_060 Hb_000019_080--Hb_001579_280 Hb_010557_010 Hb_010557_010 Hb_000019_080--Hb_010557_010 Hb_001365_020 Hb_001365_020 Hb_003053_070--Hb_001365_020 Hb_003053_070--Hb_000684_200 Hb_003053_070--Hb_004162_270 Hb_000516_080 Hb_000516_080 Hb_003053_070--Hb_000516_080 Hb_001365_030 Hb_001365_030 Hb_003053_070--Hb_001365_030 Hb_000684_200--Hb_010557_010 Hb_000684_200--Hb_004162_270 Hb_002811_250 Hb_002811_250 Hb_000684_200--Hb_002811_250 Hb_010098_040 Hb_010098_040 Hb_000684_200--Hb_010098_040 Hb_005181_120 Hb_005181_120 Hb_000684_200--Hb_005181_120 Hb_000210_080 Hb_000210_080 Hb_000395_010--Hb_000210_080 Hb_000395_010--Hb_000684_200 Hb_000395_010--Hb_004162_270 Hb_000805_010 Hb_000805_010 Hb_000395_010--Hb_000805_010 Hb_158092_100 Hb_158092_100 Hb_000395_010--Hb_158092_100 Hb_001579_280--Hb_000803_170 Hb_005563_040 Hb_005563_040 Hb_001579_280--Hb_005563_040 Hb_000089_140 Hb_000089_140 Hb_001579_280--Hb_000089_140 Hb_002811_310 Hb_002811_310 Hb_001579_280--Hb_002811_310 Hb_000270_280 Hb_000270_280 Hb_004162_270--Hb_000270_280 Hb_003680_090 Hb_003680_090 Hb_004162_270--Hb_003680_090 Hb_005784_030 Hb_005784_030 Hb_004162_270--Hb_005784_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0906 3.36873 24.1388 10.6967 0.20977 0.450342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18679 3.08758 4.24854 5.99626 34.4455

CAGE analysis