Hb_005784_030

Information

Type -
Description -
Location Contig5784: 19214-22902
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05900g
description hypothetical protein
nr
ID XP_012086081.1
description PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
swissprot
ID Q10Y48
description Uridylate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pyrH PE=3 SV=1
trembl
ID A0A067K1L0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22236 PE=3 SV=1
Gene Ontology
ID GO:0005737
description uridylate kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49735: 19450-22966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005784_030 0.0 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
2 Hb_007904_060 0.0811072227 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
3 Hb_003664_030 0.0912703427 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
4 Hb_000264_280 0.1004557528 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
5 Hb_000684_200 0.1012132207 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
6 Hb_000270_280 0.106323947 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
7 Hb_003948_020 0.1063311301 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
8 Hb_004162_270 0.112083067 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
9 Hb_003752_090 0.1126973859 - - chitinase, putative [Ricinus communis]
10 Hb_010557_010 0.1141692296 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
11 Hb_158092_100 0.1143811284 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
12 Hb_000327_200 0.114479249 - - glutathione-s-transferase omega, putative [Ricinus communis]
13 Hb_003053_070 0.1148435532 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
14 Hb_004223_270 0.1155240018 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
15 Hb_005181_120 0.1164176699 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000516_080 0.1176131646 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
17 Hb_148146_010 0.1180706274 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
18 Hb_000108_150 0.1188252018 - - alpha/beta hydrolase, putative [Ricinus communis]
19 Hb_002411_100 0.1195702418 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
20 Hb_002374_450 0.1221341364 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005784_030 Hb_005784_030 Hb_007904_060 Hb_007904_060 Hb_005784_030--Hb_007904_060 Hb_003664_030 Hb_003664_030 Hb_005784_030--Hb_003664_030 Hb_000264_280 Hb_000264_280 Hb_005784_030--Hb_000264_280 Hb_000684_200 Hb_000684_200 Hb_005784_030--Hb_000684_200 Hb_000270_280 Hb_000270_280 Hb_005784_030--Hb_000270_280 Hb_003948_020 Hb_003948_020 Hb_005784_030--Hb_003948_020 Hb_158092_100 Hb_158092_100 Hb_007904_060--Hb_158092_100 Hb_000108_150 Hb_000108_150 Hb_007904_060--Hb_000108_150 Hb_006420_010 Hb_006420_010 Hb_007904_060--Hb_006420_010 Hb_003020_250 Hb_003020_250 Hb_007904_060--Hb_003020_250 Hb_003752_090 Hb_003752_090 Hb_007904_060--Hb_003752_090 Hb_003664_030--Hb_000264_280 Hb_003664_030--Hb_003948_020 Hb_148146_010 Hb_148146_010 Hb_003664_030--Hb_148146_010 Hb_003664_030--Hb_003752_090 Hb_000834_060 Hb_000834_060 Hb_003664_030--Hb_000834_060 Hb_000264_280--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_000264_280--Hb_000061_250 Hb_001269_500 Hb_001269_500 Hb_000264_280--Hb_001269_500 Hb_000264_280--Hb_003948_020 Hb_001649_030 Hb_001649_030 Hb_000264_280--Hb_001649_030 Hb_010557_010 Hb_010557_010 Hb_000684_200--Hb_010557_010 Hb_004162_270 Hb_004162_270 Hb_000684_200--Hb_004162_270 Hb_002811_250 Hb_002811_250 Hb_000684_200--Hb_002811_250 Hb_004837_100 Hb_004837_100 Hb_000684_200--Hb_004837_100 Hb_010098_040 Hb_010098_040 Hb_000684_200--Hb_010098_040 Hb_005181_120 Hb_005181_120 Hb_000684_200--Hb_005181_120 Hb_000310_060 Hb_000310_060 Hb_000270_280--Hb_000310_060 Hb_003680_090 Hb_003680_090 Hb_000270_280--Hb_003680_090 Hb_000940_030 Hb_000940_030 Hb_000270_280--Hb_000940_030 Hb_004648_030 Hb_004648_030 Hb_000270_280--Hb_004648_030 Hb_000270_280--Hb_004162_270 Hb_002411_100 Hb_002411_100 Hb_003948_020--Hb_002411_100 Hb_000045_050 Hb_000045_050 Hb_003948_020--Hb_000045_050 Hb_003948_020--Hb_010557_010 Hb_003948_020--Hb_000061_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.876142 4.61301 22.2529 11.2238 1.37166 1.46343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71998 4.12481 2.88095 4.29839 24.2734

CAGE analysis