Hb_001269_500

Information

Type -
Description -
Location Contig1269: 524567-533417
Sequence    

Annotation

kegg
ID rcu:RCOM_1441600
description hypothetical protein
nr
ID XP_011034553.1
description PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
swissprot
ID Q8H0W0
description Protein LOW PSII ACCUMULATION 3, chloroplastic OS=Arabidopsis thaliana GN=LPA3 PE=1 SV=1
trembl
ID B9N9X9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03560g PE=4 SV=1
Gene Ontology
ID GO:0009570
description protein low psii accumulation chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08220: 524722-533427 , PASA_asmbl_08222: 531454-533427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_500 0.0 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
2 Hb_001649_030 0.0657737463 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
3 Hb_000336_200 0.07856038 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
4 Hb_009687_020 0.0854621748 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
5 Hb_000665_270 0.0884565176 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
6 Hb_000264_280 0.0920778291 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
7 Hb_006198_130 0.0925985955 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
8 Hb_002005_040 0.0936680998 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_006829_080 0.0938051215 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
10 Hb_004055_160 0.0995634786 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
11 Hb_009288_040 0.1004482801 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
12 Hb_003752_090 0.100794441 - - chitinase, putative [Ricinus communis]
13 Hb_002928_030 0.1010957148 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
14 Hb_003171_030 0.1014747554 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
15 Hb_000537_070 0.102373224 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
16 Hb_158092_100 0.1044810248 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
17 Hb_000684_430 0.1102163009 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
18 Hb_005116_100 0.1107426793 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
19 Hb_000108_150 0.1109313447 - - alpha/beta hydrolase, putative [Ricinus communis]
20 Hb_126917_010 0.1143251087 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_500 Hb_001269_500 Hb_001649_030 Hb_001649_030 Hb_001269_500--Hb_001649_030 Hb_000336_200 Hb_000336_200 Hb_001269_500--Hb_000336_200 Hb_009687_020 Hb_009687_020 Hb_001269_500--Hb_009687_020 Hb_000665_270 Hb_000665_270 Hb_001269_500--Hb_000665_270 Hb_000264_280 Hb_000264_280 Hb_001269_500--Hb_000264_280 Hb_006198_130 Hb_006198_130 Hb_001269_500--Hb_006198_130 Hb_002928_030 Hb_002928_030 Hb_001649_030--Hb_002928_030 Hb_001649_030--Hb_000665_270 Hb_003752_090 Hb_003752_090 Hb_001649_030--Hb_003752_090 Hb_000358_040 Hb_000358_040 Hb_001649_030--Hb_000358_040 Hb_003376_390 Hb_003376_390 Hb_001649_030--Hb_003376_390 Hb_000336_200--Hb_000665_270 Hb_000336_200--Hb_001649_030 Hb_000465_440 Hb_000465_440 Hb_000336_200--Hb_000465_440 Hb_000336_200--Hb_000358_040 Hb_009288_040 Hb_009288_040 Hb_000336_200--Hb_009288_040 Hb_003171_030 Hb_003171_030 Hb_009687_020--Hb_003171_030 Hb_009687_020--Hb_006198_130 Hb_158092_100 Hb_158092_100 Hb_009687_020--Hb_158092_100 Hb_004055_160 Hb_004055_160 Hb_009687_020--Hb_004055_160 Hb_000473_050 Hb_000473_050 Hb_009687_020--Hb_000473_050 Hb_000665_270--Hb_000465_440 Hb_000665_270--Hb_000358_040 Hb_000665_270--Hb_009288_040 Hb_003664_030 Hb_003664_030 Hb_000264_280--Hb_003664_030 Hb_000108_150 Hb_000108_150 Hb_000264_280--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_000264_280--Hb_000061_250 Hb_003948_020 Hb_003948_020 Hb_000264_280--Hb_003948_020 Hb_000264_280--Hb_001649_030 Hb_006198_130--Hb_003171_030 Hb_000059_270 Hb_000059_270 Hb_006198_130--Hb_000059_270 Hb_163950_070 Hb_163950_070 Hb_006198_130--Hb_163950_070 Hb_001220_050 Hb_001220_050 Hb_006198_130--Hb_001220_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.31931 5.19681 18.1638 13.0749 3.25219 3.54558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.4096 4.43839 2.20172 2.91332 30.2687

CAGE analysis