Hb_004055_160

Information

Type -
Description -
Location Contig4055: 112124-117394
Sequence    

Annotation

kegg
ID cic:CICLE_v10025937mg
description hypothetical protein
nr
ID XP_012068963.1
description PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
swissprot
ID F4I907
description Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana GN=GLYR2 PE=1 SV=1
trembl
ID A0A067KXB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24756 PE=4 SV=1
Gene Ontology
ID GO:0004616
description glyoxylate succinic semialdehyde reductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40226: 112255-117389 , PASA_asmbl_40227: 112451-114668 , PASA_asmbl_40228: 115127-115277
cDNA
(Sanger)
(ID:Location)		 001_I02.ab1: 112263-116234 , 043_D05.ab1: 112263-116237

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_160 0.0 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
2 Hb_002005_040 0.056136248 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_000684_430 0.0744007651 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
4 Hb_009687_020 0.083242132 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
5 Hb_006829_080 0.0839176699 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
6 Hb_005116_100 0.0903074417 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
7 Hb_001348_090 0.0913383851 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
8 Hb_002217_140 0.0938284546 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
9 Hb_158092_100 0.0944245164 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
10 Hb_001269_500 0.0995634786 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
11 Hb_002044_160 0.1015692192 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
12 Hb_000473_050 0.1031464959 - - chromatin regulatory protein sir2, putative [Ricinus communis]
13 Hb_000803_240 0.103732039 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
14 Hb_001723_030 0.1055279067 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
15 Hb_000108_150 0.1057767572 - - alpha/beta hydrolase, putative [Ricinus communis]
16 Hb_000032_390 0.1080924338 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
17 Hb_014361_110 0.1091699069 - - RNA binding protein, putative [Ricinus communis]
18 Hb_005618_080 0.1092619828 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
19 Hb_000045_050 0.1118685896 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
20 Hb_000193_220 0.1125232436 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004055_160 Hb_004055_160 Hb_002005_040 Hb_002005_040 Hb_004055_160--Hb_002005_040 Hb_000684_430 Hb_000684_430 Hb_004055_160--Hb_000684_430 Hb_009687_020 Hb_009687_020 Hb_004055_160--Hb_009687_020 Hb_006829_080 Hb_006829_080 Hb_004055_160--Hb_006829_080 Hb_005116_100 Hb_005116_100 Hb_004055_160--Hb_005116_100 Hb_001348_090 Hb_001348_090 Hb_004055_160--Hb_001348_090 Hb_002005_040--Hb_001348_090 Hb_002005_040--Hb_005116_100 Hb_002044_160 Hb_002044_160 Hb_002005_040--Hb_002044_160 Hb_002005_040--Hb_000684_430 Hb_001269_500 Hb_001269_500 Hb_002005_040--Hb_001269_500 Hb_001959_060 Hb_001959_060 Hb_000684_430--Hb_001959_060 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_000684_430--Hb_006829_080 Hb_148146_010 Hb_148146_010 Hb_000684_430--Hb_148146_010 Hb_003171_030 Hb_003171_030 Hb_009687_020--Hb_003171_030 Hb_006198_130 Hb_006198_130 Hb_009687_020--Hb_006198_130 Hb_158092_100 Hb_158092_100 Hb_009687_020--Hb_158092_100 Hb_009687_020--Hb_001269_500 Hb_000473_050 Hb_000473_050 Hb_009687_020--Hb_000473_050 Hb_006829_080--Hb_001959_060 Hb_006829_080--Hb_000473_050 Hb_002232_380 Hb_002232_380 Hb_006829_080--Hb_002232_380 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_005116_100--Hb_148146_010 Hb_005618_080 Hb_005618_080 Hb_005116_100--Hb_005618_080 Hb_000402_020 Hb_000402_020 Hb_005116_100--Hb_000402_020 Hb_001649_030 Hb_001649_030 Hb_005116_100--Hb_001649_030 Hb_002374_450 Hb_002374_450 Hb_001348_090--Hb_002374_450 Hb_004242_170 Hb_004242_170 Hb_001348_090--Hb_004242_170 Hb_024677_010 Hb_024677_010 Hb_001348_090--Hb_024677_010 Hb_000441_050 Hb_000441_050 Hb_001348_090--Hb_000441_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.57928 2.80614 18.3439 9.67402 3.35429 3.62743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.64345 2.40687 1.93489 4.55845 30.5105

CAGE analysis