Hb_002217_140

Information

Type -
Description -
Location Contig2217: 144075-147215
Sequence    

Annotation

kegg
ID rcu:RCOM_1002410
description tex protein-relatedtranscription accessory protein, putative
nr
ID XP_010270863.1
description PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
swissprot
ID P29344
description 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1
trembl
ID B9RZW3
description Tex protein-relatedtranscription accessory protein, putative OS=Ricinus communis GN=RCOM_1002410 PE=4 SV=1
Gene Ontology
ID GO:0003676
description 30s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22902: 144175-147123 , PASA_asmbl_22904: 146916-147383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_140 0.0 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
2 Hb_000684_430 0.07606353 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
3 Hb_001723_030 0.0796772394 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
4 Hb_004055_160 0.0938284546 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
5 Hb_000803_240 0.0997036823 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
6 Hb_006829_080 0.1033397596 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
7 Hb_000802_050 0.1041972401 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
8 Hb_002005_040 0.104493995 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_005618_080 0.1050087456 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
10 Hb_014361_110 0.1058103499 - - RNA binding protein, putative [Ricinus communis]
11 Hb_189003_060 0.1075038783 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001959_060 0.1110215486 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
13 Hb_002027_410 0.1178627294 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
14 Hb_001300_130 0.120312994 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
15 Hb_000473_050 0.1205974305 - - chromatin regulatory protein sir2, putative [Ricinus communis]
16 Hb_009687_020 0.1230923787 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
17 Hb_005116_100 0.1231721522 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
18 Hb_024399_020 0.1249980232 - - electron transporter, putative [Ricinus communis]
19 Hb_000309_020 0.12537644 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
20 Hb_004871_010 0.1255886842 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002217_140 Hb_002217_140 Hb_000684_430 Hb_000684_430 Hb_002217_140--Hb_000684_430 Hb_001723_030 Hb_001723_030 Hb_002217_140--Hb_001723_030 Hb_004055_160 Hb_004055_160 Hb_002217_140--Hb_004055_160 Hb_000803_240 Hb_000803_240 Hb_002217_140--Hb_000803_240 Hb_006829_080 Hb_006829_080 Hb_002217_140--Hb_006829_080 Hb_000802_050 Hb_000802_050 Hb_002217_140--Hb_000802_050 Hb_001959_060 Hb_001959_060 Hb_000684_430--Hb_001959_060 Hb_000684_430--Hb_004055_160 Hb_000684_430--Hb_006829_080 Hb_148146_010 Hb_148146_010 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040 Hb_001723_030--Hb_000803_240 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_001723_030--Hb_000684_430 Hb_004055_160--Hb_002005_040 Hb_009687_020 Hb_009687_020 Hb_004055_160--Hb_009687_020 Hb_004055_160--Hb_006829_080 Hb_005116_100 Hb_005116_100 Hb_004055_160--Hb_005116_100 Hb_001348_090 Hb_001348_090 Hb_004055_160--Hb_001348_090 Hb_010984_010 Hb_010984_010 Hb_000803_240--Hb_010984_010 Hb_014361_110 Hb_014361_110 Hb_000803_240--Hb_014361_110 Hb_002740_190 Hb_002740_190 Hb_000803_240--Hb_002740_190 Hb_166127_030 Hb_166127_030 Hb_000803_240--Hb_166127_030 Hb_006829_080--Hb_001959_060 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_002232_380 Hb_002232_380 Hb_006829_080--Hb_002232_380 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_001300_130 Hb_001300_130 Hb_000802_050--Hb_001300_130 Hb_000802_050--Hb_006829_080 Hb_003549_140 Hb_003549_140 Hb_000802_050--Hb_003549_140 Hb_000802_050--Hb_002232_380 Hb_000802_050--Hb_000005_130 Hb_000802_050--Hb_000684_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.9609 7.21847 52.1083 14.2293 11.1592 10.0829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.81511 6.1912 8.99229 13.4393 79.0377

CAGE analysis