Hb_003549_140

Information

Type -
Description -
Location Contig3549: 122991-124264
Sequence    

Annotation

kegg
ID rcu:RCOM_1435730
description Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative
nr
ID XP_002512537.1
description Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID O23403
description PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1
trembl
ID B9RFL8
description Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1435730 PE=4 SV=1
Gene Ontology
ID GO:0009535
description psbp domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36781: 123041-124322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_140 0.0 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_000802_050 0.0899882572 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
3 Hb_006829_080 0.0904051937 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
4 Hb_003948_020 0.0990540084 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
5 Hb_002411_100 0.100185796 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
6 Hb_001300_130 0.1059706597 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
7 Hb_000045_050 0.1071323379 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
8 Hb_000473_050 0.1082382867 - - chromatin regulatory protein sir2, putative [Ricinus communis]
9 Hb_000322_040 0.1105871503 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
10 Hb_006252_030 0.115965923 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
11 Hb_000684_430 0.116636016 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
12 Hb_002232_380 0.1167897082 - - malate dehydrogenase, putative [Ricinus communis]
13 Hb_004055_160 0.1171996066 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
14 Hb_005618_080 0.1186319075 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
15 Hb_004459_060 0.119820234 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
16 Hb_001047_180 0.1200532938 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000544_080 0.1203817478 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
18 Hb_000005_130 0.1215770277 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
19 Hb_000152_490 0.1223648604 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
20 Hb_004117_040 0.1224647789 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]

Gene co-expression network

sample Hb_003549_140 Hb_003549_140 Hb_000802_050 Hb_000802_050 Hb_003549_140--Hb_000802_050 Hb_006829_080 Hb_006829_080 Hb_003549_140--Hb_006829_080 Hb_003948_020 Hb_003948_020 Hb_003549_140--Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_003549_140--Hb_002411_100 Hb_001300_130 Hb_001300_130 Hb_003549_140--Hb_001300_130 Hb_000045_050 Hb_000045_050 Hb_003549_140--Hb_000045_050 Hb_000802_050--Hb_001300_130 Hb_000802_050--Hb_006829_080 Hb_002232_380 Hb_002232_380 Hb_000802_050--Hb_002232_380 Hb_000005_130 Hb_000005_130 Hb_000802_050--Hb_000005_130 Hb_000684_430 Hb_000684_430 Hb_000802_050--Hb_000684_430 Hb_001959_060 Hb_001959_060 Hb_006829_080--Hb_001959_060 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_006829_080--Hb_000684_430 Hb_006829_080--Hb_002232_380 Hb_004055_160 Hb_004055_160 Hb_006829_080--Hb_004055_160 Hb_006829_080--Hb_000005_130 Hb_003948_020--Hb_002411_100 Hb_003948_020--Hb_000045_050 Hb_003664_030 Hb_003664_030 Hb_003948_020--Hb_003664_030 Hb_010557_010 Hb_010557_010 Hb_003948_020--Hb_010557_010 Hb_000061_250 Hb_000061_250 Hb_003948_020--Hb_000061_250 Hb_000264_280 Hb_000264_280 Hb_003948_020--Hb_000264_280 Hb_002411_100--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_027298_020 Hb_027298_020 Hb_001300_130--Hb_027298_020 Hb_001300_130--Hb_000703_070 Hb_001300_130--Hb_000684_430 Hb_001300_130--Hb_005563_040 Hb_000045_050--Hb_000061_250 Hb_000108_150 Hb_000108_150 Hb_000045_050--Hb_000108_150 Hb_000544_080 Hb_000544_080 Hb_000045_050--Hb_000544_080 Hb_002811_250 Hb_002811_250 Hb_000045_050--Hb_002811_250 Hb_005181_120 Hb_005181_120 Hb_000045_050--Hb_005181_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.85118 2.10927 26.6693 10.5492 2.97434 4.08438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.80108 2.60305 2.57527 1.75177 30.442

CAGE analysis