Hb_000802_050

Information

Type transcription factor
Description TF Family: TCP
Location Contig802: 54436-55884
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06440g
description POPTRDRAFT_197397; hypothetical protein
nr
ID XP_012072140.1
description PREDICTED: transcription factor TCP2-like [Jatropha curcas]
swissprot
ID Q93V43
description Transcription factor TCP2 OS=Arabidopsis thaliana GN=TCP2 PE=2 SV=1
trembl
ID A0A067L0H7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04643 PE=4 SV=1
Gene Ontology
ID GO:0007165
description transcription factor tcp2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58824: 52354-67349 , PASA_asmbl_58825: 55767-66304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000802_050 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
2 Hb_001300_130 0.084784385 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
3 Hb_006829_080 0.0897559559 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
4 Hb_003549_140 0.0899882572 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_002232_380 0.0943312212 - - malate dehydrogenase, putative [Ricinus communis]
6 Hb_000005_130 0.0953442047 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
7 Hb_000684_430 0.0970174318 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
8 Hb_005618_080 0.0975880764 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
9 Hb_002217_140 0.1041972401 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
10 Hb_001959_060 0.1062758848 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
11 Hb_000322_040 0.1074912241 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
12 Hb_000703_070 0.1104406438 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
13 Hb_000056_310 0.1110919281 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
14 Hb_027298_020 0.1184365252 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
15 Hb_004055_160 0.1195268031 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
16 Hb_005488_160 0.1199073188 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
17 Hb_006252_030 0.1204166344 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
18 Hb_007694_060 0.121560346 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
19 Hb_002411_100 0.1228465491 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
20 Hb_000146_030 0.1236775364 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000802_050 Hb_000802_050 Hb_001300_130 Hb_001300_130 Hb_000802_050--Hb_001300_130 Hb_006829_080 Hb_006829_080 Hb_000802_050--Hb_006829_080 Hb_003549_140 Hb_003549_140 Hb_000802_050--Hb_003549_140 Hb_002232_380 Hb_002232_380 Hb_000802_050--Hb_002232_380 Hb_000005_130 Hb_000005_130 Hb_000802_050--Hb_000005_130 Hb_000684_430 Hb_000684_430 Hb_000802_050--Hb_000684_430 Hb_027298_020 Hb_027298_020 Hb_001300_130--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_001300_130--Hb_000703_070 Hb_001300_130--Hb_003549_140 Hb_001300_130--Hb_000684_430 Hb_005563_040 Hb_005563_040 Hb_001300_130--Hb_005563_040 Hb_001959_060 Hb_001959_060 Hb_006829_080--Hb_001959_060 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_006829_080--Hb_000684_430 Hb_006829_080--Hb_002232_380 Hb_004055_160 Hb_004055_160 Hb_006829_080--Hb_004055_160 Hb_006829_080--Hb_000005_130 Hb_003549_140--Hb_006829_080 Hb_003948_020 Hb_003948_020 Hb_003549_140--Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_003549_140--Hb_002411_100 Hb_000045_050 Hb_000045_050 Hb_003549_140--Hb_000045_050 Hb_002232_380--Hb_000703_070 Hb_002232_380--Hb_027298_020 Hb_005618_080 Hb_005618_080 Hb_002232_380--Hb_005618_080 Hb_003494_030 Hb_003494_030 Hb_002232_380--Hb_003494_030 Hb_007426_170 Hb_007426_170 Hb_000005_130--Hb_007426_170 Hb_007694_060 Hb_007694_060 Hb_000005_130--Hb_007694_060 Hb_006620_070 Hb_006620_070 Hb_000005_130--Hb_006620_070 Hb_000005_130--Hb_001959_060 Hb_000684_430--Hb_001959_060 Hb_000684_430--Hb_004055_160 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_148146_010 Hb_148146_010 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.65224 3.19449 47.716 10.9129 6.82313 7.78464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.2652 6.21329 4.26969 4.62564 54.6947

CAGE analysis