Hb_003494_030

Information

Type -
Description -
Location Contig3494: 19287-26250
Sequence    

Annotation

kegg
ID rcu:RCOM_0703830
description Protease degQ precursor, putative (EC:1.3.1.74)
nr
ID XP_012084693.1
description PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
swissprot
ID Q9LU10
description Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1
trembl
ID B9SEF2
description Protease degQ, putative OS=Ricinus communis GN=RCOM_0703830 PE=4 SV=1
Gene Ontology
ID GO:0004252
description protease do-like chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36342: 19226-24059 , PASA_asmbl_36343: 25403-25643 , PASA_asmbl_36344: 26113-26215
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_030 0.0 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
2 Hb_002304_180 0.0957892316 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
3 Hb_000032_390 0.1020908947 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
4 Hb_002232_380 0.1090421943 - - malate dehydrogenase, putative [Ricinus communis]
5 Hb_006829_080 0.1109685725 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
6 Hb_000193_220 0.1117458892 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
7 Hb_000667_140 0.1141401822 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
8 Hb_027298_020 0.1191669694 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
9 Hb_036790_120 0.1205608422 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
10 Hb_000803_170 0.121027152 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
11 Hb_005563_040 0.1219668798 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
12 Hb_004055_160 0.1242506186 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
13 Hb_000402_170 0.1243999556 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
14 Hb_126917_010 0.1257584446 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
15 Hb_000029_330 0.1291010951 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
16 Hb_000977_270 0.1292858519 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
17 Hb_003106_170 0.130208629 - - Endonuclease III, putative [Ricinus communis]
18 Hb_014361_110 0.1313687714 - - RNA binding protein, putative [Ricinus communis]
19 Hb_000442_070 0.1318168697 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
20 Hb_001300_130 0.1320001562 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003494_030 Hb_003494_030 Hb_002304_180 Hb_002304_180 Hb_003494_030--Hb_002304_180 Hb_000032_390 Hb_000032_390 Hb_003494_030--Hb_000032_390 Hb_002232_380 Hb_002232_380 Hb_003494_030--Hb_002232_380 Hb_006829_080 Hb_006829_080 Hb_003494_030--Hb_006829_080 Hb_000193_220 Hb_000193_220 Hb_003494_030--Hb_000193_220 Hb_000667_140 Hb_000667_140 Hb_003494_030--Hb_000667_140 Hb_002304_180--Hb_000667_140 Hb_000977_270 Hb_000977_270 Hb_002304_180--Hb_000977_270 Hb_000023_210 Hb_000023_210 Hb_002304_180--Hb_000023_210 Hb_007044_250 Hb_007044_250 Hb_002304_180--Hb_007044_250 Hb_000402_170 Hb_000402_170 Hb_002304_180--Hb_000402_170 Hb_000045_050 Hb_000045_050 Hb_000032_390--Hb_000045_050 Hb_000032_390--Hb_006829_080 Hb_000684_430 Hb_000684_430 Hb_000032_390--Hb_000684_430 Hb_000032_390--Hb_000193_220 Hb_004055_160 Hb_004055_160 Hb_000032_390--Hb_004055_160 Hb_002232_380--Hb_006829_080 Hb_000802_050 Hb_000802_050 Hb_002232_380--Hb_000802_050 Hb_000703_070 Hb_000703_070 Hb_002232_380--Hb_000703_070 Hb_027298_020 Hb_027298_020 Hb_002232_380--Hb_027298_020 Hb_005618_080 Hb_005618_080 Hb_002232_380--Hb_005618_080 Hb_001959_060 Hb_001959_060 Hb_006829_080--Hb_001959_060 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_006829_080--Hb_000684_430 Hb_006829_080--Hb_004055_160 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_010721_020 Hb_010721_020 Hb_000193_220--Hb_010721_020 Hb_002811_250 Hb_002811_250 Hb_000193_220--Hb_002811_250 Hb_000803_170 Hb_000803_170 Hb_000193_220--Hb_000803_170 Hb_007982_040 Hb_007982_040 Hb_000193_220--Hb_007982_040 Hb_000118_090 Hb_000118_090 Hb_000193_220--Hb_000118_090 Hb_000966_040 Hb_000966_040 Hb_000193_220--Hb_000966_040 Hb_000038_020 Hb_000038_020 Hb_000667_140--Hb_000038_020 Hb_003427_080 Hb_003427_080 Hb_000667_140--Hb_003427_080 Hb_001266_160 Hb_001266_160 Hb_000667_140--Hb_001266_160 Hb_000359_070 Hb_000359_070 Hb_000667_140--Hb_000359_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.94301 0.858768 7.62015 3.0277 0.668772 1.41436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10489 1.86266 0.653015 1.2195 17.2949

CAGE analysis