Hb_003427_080

Information

Type -
Description -
Location Contig3427: 98667-113570
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14340g
description POPTRDRAFT_821063; hypothetical protein
nr
ID XP_012069317.1
description PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
swissprot
ID B9HQZ6
description Probable alanine--tRNA ligase, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_821063 PE=3 SV=1
trembl
ID A0A067L8K2
description Probable alanine--tRNA ligase, chloroplastic OS=Jatropha curcas GN=JCGZ_03949 PE=3 SV=1
Gene Ontology
ID GO:0005739
description probable alanine--trna chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35779: 98594-113481 , PASA_asmbl_35780: 98906-112919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003427_080 0.0 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
2 Hb_000402_170 0.0802681259 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
3 Hb_000053_120 0.0869974238 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
4 Hb_000038_020 0.1070857614 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
5 Hb_000667_140 0.1083918546 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
6 Hb_003077_130 0.1250154449 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
7 Hb_166127_030 0.1285778335 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_036790_120 0.1300034302 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
9 Hb_004611_040 0.1304789409 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000189_250 0.1365432286 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
11 Hb_024714_080 0.1388066002 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
12 Hb_006856_030 0.1389724637 - - Uridine kinase-like protein 4 [Glycine soja]
13 Hb_001723_030 0.1391208052 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
14 Hb_000803_240 0.1418156365 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
15 Hb_000934_020 0.1431980982 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
16 Hb_000023_210 0.1435471904 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
17 Hb_000069_490 0.1442472914 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006062_030 0.1447325453 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
19 Hb_000069_370 0.1453907956 - - -
20 Hb_005332_150 0.145561139 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]

Gene co-expression network

sample Hb_003427_080 Hb_003427_080 Hb_000402_170 Hb_000402_170 Hb_003427_080--Hb_000402_170 Hb_000053_120 Hb_000053_120 Hb_003427_080--Hb_000053_120 Hb_000038_020 Hb_000038_020 Hb_003427_080--Hb_000038_020 Hb_000667_140 Hb_000667_140 Hb_003427_080--Hb_000667_140 Hb_003077_130 Hb_003077_130 Hb_003427_080--Hb_003077_130 Hb_166127_030 Hb_166127_030 Hb_003427_080--Hb_166127_030 Hb_036790_120 Hb_036790_120 Hb_000402_170--Hb_036790_120 Hb_000023_210 Hb_000023_210 Hb_000402_170--Hb_000023_210 Hb_000300_020 Hb_000300_020 Hb_000402_170--Hb_000300_020 Hb_001723_030 Hb_001723_030 Hb_000402_170--Hb_001723_030 Hb_002304_180 Hb_002304_180 Hb_000402_170--Hb_002304_180 Hb_006062_030 Hb_006062_030 Hb_000053_120--Hb_006062_030 Hb_024714_080 Hb_024714_080 Hb_000053_120--Hb_024714_080 Hb_000053_120--Hb_003077_130 Hb_000069_490 Hb_000069_490 Hb_000053_120--Hb_000069_490 Hb_000053_120--Hb_000402_170 Hb_000038_020--Hb_000667_140 Hb_168031_020 Hb_168031_020 Hb_000038_020--Hb_168031_020 Hb_000359_070 Hb_000359_070 Hb_000038_020--Hb_000359_070 Hb_005332_150 Hb_005332_150 Hb_000038_020--Hb_005332_150 Hb_000069_370 Hb_000069_370 Hb_000038_020--Hb_000069_370 Hb_000667_140--Hb_002304_180 Hb_003494_030 Hb_003494_030 Hb_000667_140--Hb_003494_030 Hb_001266_160 Hb_001266_160 Hb_000667_140--Hb_001266_160 Hb_000667_140--Hb_000359_070 Hb_003077_130--Hb_024714_080 Hb_003077_130--Hb_000069_490 Hb_000997_140 Hb_000997_140 Hb_003077_130--Hb_000997_140 Hb_004785_070 Hb_004785_070 Hb_003077_130--Hb_004785_070 Hb_028707_110 Hb_028707_110 Hb_003077_130--Hb_028707_110 Hb_010757_030 Hb_010757_030 Hb_003077_130--Hb_010757_030 Hb_000640_260 Hb_000640_260 Hb_166127_030--Hb_000640_260 Hb_000189_250 Hb_000189_250 Hb_166127_030--Hb_000189_250 Hb_002671_130 Hb_002671_130 Hb_166127_030--Hb_002671_130 Hb_000803_240 Hb_000803_240 Hb_166127_030--Hb_000803_240 Hb_000934_020 Hb_000934_020 Hb_166127_030--Hb_000934_020 Hb_021409_190 Hb_021409_190 Hb_166127_030--Hb_021409_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22764 3.07069 11.7857 6.47374 4.79 5.60888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47953 3.00661 3.16624 3.26128 52.312

CAGE analysis