Hb_168031_020

Information

Type -
Description -
Location Contig168031: 32454-33563
Sequence    

Annotation

kegg
ID rcu:RCOM_0406040
description ATP binding protein, putative
nr
ID XP_012087981.1
description PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
swissprot
ID Q9C8S9
description Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana GN=RH48 PE=3 SV=1
trembl
ID A0A067JKW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25101 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15611: 32149-33583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168031_020 0.0 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
2 Hb_000038_020 0.0922621383 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
3 Hb_005332_150 0.119729262 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
4 Hb_001793_030 0.1319363738 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
5 Hb_000890_110 0.1357520661 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
6 Hb_000359_070 0.1393982283 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
7 Hb_078477_060 0.1428457984 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
8 Hb_000699_080 0.1438164949 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
9 Hb_000966_040 0.1445694415 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
10 Hb_002686_060 0.1467585395 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000574_330 0.1475933023 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
12 Hb_004712_200 0.1504576941 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
13 Hb_004109_130 0.1505326825 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
14 Hb_007002_010 0.1554061798 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
15 Hb_000189_250 0.1590188176 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
16 Hb_127552_050 0.1607539887 - - hypothetical protein VITISV_030752 [Vitis vinifera]
17 Hb_011900_020 0.1613501635 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
18 Hb_000667_140 0.1619591104 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
19 Hb_000975_050 0.1630550473 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
20 Hb_003687_160 0.1631724255 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_168031_020 Hb_168031_020 Hb_000038_020 Hb_000038_020 Hb_168031_020--Hb_000038_020 Hb_005332_150 Hb_005332_150 Hb_168031_020--Hb_005332_150 Hb_001793_030 Hb_001793_030 Hb_168031_020--Hb_001793_030 Hb_000890_110 Hb_000890_110 Hb_168031_020--Hb_000890_110 Hb_000359_070 Hb_000359_070 Hb_168031_020--Hb_000359_070 Hb_078477_060 Hb_078477_060 Hb_168031_020--Hb_078477_060 Hb_000667_140 Hb_000667_140 Hb_000038_020--Hb_000667_140 Hb_000038_020--Hb_000359_070 Hb_000038_020--Hb_005332_150 Hb_003427_080 Hb_003427_080 Hb_000038_020--Hb_003427_080 Hb_000069_370 Hb_000069_370 Hb_000038_020--Hb_000069_370 Hb_004109_130 Hb_004109_130 Hb_005332_150--Hb_004109_130 Hb_000966_040 Hb_000966_040 Hb_005332_150--Hb_000966_040 Hb_005332_150--Hb_000069_370 Hb_166127_030 Hb_166127_030 Hb_005332_150--Hb_166127_030 Hb_007933_030 Hb_007933_030 Hb_001793_030--Hb_007933_030 Hb_001793_030--Hb_078477_060 Hb_001080_150 Hb_001080_150 Hb_001793_030--Hb_001080_150 Hb_000329_080 Hb_000329_080 Hb_001793_030--Hb_000329_080 Hb_000414_180 Hb_000414_180 Hb_001793_030--Hb_000414_180 Hb_007002_010 Hb_007002_010 Hb_000890_110--Hb_007002_010 Hb_000683_080 Hb_000683_080 Hb_000890_110--Hb_000683_080 Hb_158144_020 Hb_158144_020 Hb_000890_110--Hb_158144_020 Hb_000890_110--Hb_000038_020 Hb_000352_220 Hb_000352_220 Hb_000890_110--Hb_000352_220 Hb_011900_020 Hb_011900_020 Hb_000359_070--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_000359_070--Hb_156850_020 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_012940_020 Hb_012940_020 Hb_000359_070--Hb_012940_020 Hb_028960_010 Hb_028960_010 Hb_000359_070--Hb_028960_010 Hb_000014_190 Hb_000014_190 Hb_078477_060--Hb_000014_190 Hb_000963_090 Hb_000963_090 Hb_078477_060--Hb_000963_090 Hb_003077_130 Hb_003077_130 Hb_078477_060--Hb_003077_130 Hb_001080_030 Hb_001080_030 Hb_078477_060--Hb_001080_030 Hb_078477_060--Hb_001080_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.73241 9.24217 14.2357 13.6905 4.12103 3.39215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.1199 4.10172 6.1695 13.5729 115.77

CAGE analysis