Hb_012940_020

Information

Type -
Description -
Location Contig12940: 13923-21877
Sequence    

Annotation

kegg
ID rcu:RCOM_1408430
description zeaxanthin epoxidase, putative (EC:1.14.13.90)
nr
ID XP_002523587.1
description zeaxanthin epoxidase, putative [Ricinus communis]
swissprot
ID O81360
description Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1
trembl
ID B9SC68
description Zeaxanthin epoxidase, chloroplastic OS=Ricinus communis GN=RCOM_1408430 PE=4 SV=1
Gene Ontology
ID GO:0009941
description zeaxanthin epoxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08835: 14168-21892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012940_020 0.0 - - zeaxanthin epoxidase, putative [Ricinus communis]
2 Hb_028960_010 0.0661222929 - - phosphoglycerate kinase, putative [Ricinus communis]
3 Hb_156850_020 0.0744382089 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
4 Hb_068804_110 0.0879644506 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
5 Hb_003336_020 0.0928700775 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
6 Hb_106552_030 0.0968441823 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
7 Hb_000359_070 0.097542563 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
8 Hb_011900_020 0.1187319061 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
9 Hb_000367_220 0.1238243617 - - hypothetical protein RCOM_1470580 [Ricinus communis]
10 Hb_006816_040 0.1239461085 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
11 Hb_000360_010 0.1255220997 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_010080_070 0.1257861712 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
13 Hb_000029_380 0.1261103981 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007595_020 0.1309738143 - - maturase K [Hevea brasiliensis]
15 Hb_001085_200 0.1343469715 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
16 Hb_000992_090 0.1369317367 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
17 Hb_189099_020 0.1372141848 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
18 Hb_079526_010 0.1377131971 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Populus euphratica]
19 Hb_054865_040 0.1397354888 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
20 Hb_001610_100 0.1442147188 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_012940_020 Hb_012940_020 Hb_028960_010 Hb_028960_010 Hb_012940_020--Hb_028960_010 Hb_156850_020 Hb_156850_020 Hb_012940_020--Hb_156850_020 Hb_068804_110 Hb_068804_110 Hb_012940_020--Hb_068804_110 Hb_003336_020 Hb_003336_020 Hb_012940_020--Hb_003336_020 Hb_106552_030 Hb_106552_030 Hb_012940_020--Hb_106552_030 Hb_000359_070 Hb_000359_070 Hb_012940_020--Hb_000359_070 Hb_028960_010--Hb_156850_020 Hb_028960_010--Hb_068804_110 Hb_001691_180 Hb_001691_180 Hb_028960_010--Hb_001691_180 Hb_028960_010--Hb_000359_070 Hb_028960_010--Hb_106552_030 Hb_156850_020--Hb_106552_030 Hb_010080_070 Hb_010080_070 Hb_156850_020--Hb_010080_070 Hb_011900_020 Hb_011900_020 Hb_156850_020--Hb_011900_020 Hb_156850_020--Hb_000359_070 Hb_007595_020 Hb_007595_020 Hb_068804_110--Hb_007595_020 Hb_068804_110--Hb_156850_020 Hb_001610_100 Hb_001610_100 Hb_068804_110--Hb_001610_100 Hb_001085_200 Hb_001085_200 Hb_068804_110--Hb_001085_200 Hb_003336_020--Hb_028960_010 Hb_000699_080 Hb_000699_080 Hb_003336_020--Hb_000699_080 Hb_003336_020--Hb_000359_070 Hb_002686_060 Hb_002686_060 Hb_003336_020--Hb_002686_060 Hb_003336_020--Hb_156850_020 Hb_106552_030--Hb_010080_070 Hb_000992_090 Hb_000992_090 Hb_106552_030--Hb_000992_090 Hb_106552_030--Hb_068804_110 Hb_000360_010 Hb_000360_010 Hb_106552_030--Hb_000360_010 Hb_000359_070--Hb_011900_020 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_000038_020 Hb_000038_020 Hb_000359_070--Hb_000038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.84624 5.9354 27.7875 24.013 1.59002 2.23506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.22265 3.44152 4.19663 6.41279 228.809

CAGE analysis