Hb_011900_020

Information

Type -
Description -
Location Contig11900: 43212-45305
Sequence    

Annotation

kegg
ID vvi:100259703
description pentatricopeptide repeat-containing protein At4g16390, chloroplastic
nr
ID XP_012078071.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
swissprot
ID Q8GWE0
description Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
trembl
ID A0A067K9J7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13687 PE=4 SV=1
Gene Ontology
ID GO:0009570
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05617: 43182-45455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011900_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
2 Hb_156850_020 0.0752425037 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
3 Hb_000359_070 0.0769323262 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
4 Hb_000360_010 0.0831725467 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_006816_040 0.0912238156 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
6 Hb_010080_070 0.1034933186 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
7 Hb_002835_090 0.104214974 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
8 Hb_106552_030 0.1128093157 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
9 Hb_003905_030 0.1137057042 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_028960_010 0.1145894486 - - phosphoglycerate kinase, putative [Ricinus communis]
11 Hb_000359_160 0.1176872799 - - PREDICTED: protein CAJ1 [Jatropha curcas]
12 Hb_012940_020 0.1187319061 - - zeaxanthin epoxidase, putative [Ricinus communis]
13 Hb_001584_050 0.120172522 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_007595_050 0.1203553144 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
15 Hb_000107_540 0.123517526 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
16 Hb_004979_050 0.1274861966 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
17 Hb_001517_010 0.1313668213 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000103_240 0.1321775789 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]
19 Hb_000038_020 0.1347505813 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
20 Hb_000966_040 0.1360854066 - - hypothetical protein JCGZ_01642 [Jatropha curcas]

Gene co-expression network

sample Hb_011900_020 Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_011900_020--Hb_156850_020 Hb_000359_070 Hb_000359_070 Hb_011900_020--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_011900_020--Hb_000360_010 Hb_006816_040 Hb_006816_040 Hb_011900_020--Hb_006816_040 Hb_010080_070 Hb_010080_070 Hb_011900_020--Hb_010080_070 Hb_002835_090 Hb_002835_090 Hb_011900_020--Hb_002835_090 Hb_106552_030 Hb_106552_030 Hb_156850_020--Hb_106552_030 Hb_156850_020--Hb_010080_070 Hb_028960_010 Hb_028960_010 Hb_156850_020--Hb_028960_010 Hb_012940_020 Hb_012940_020 Hb_156850_020--Hb_012940_020 Hb_156850_020--Hb_000359_070 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_000359_070--Hb_012940_020 Hb_000038_020 Hb_000038_020 Hb_000359_070--Hb_000038_020 Hb_000359_070--Hb_028960_010 Hb_000360_010--Hb_156850_020 Hb_003905_030 Hb_003905_030 Hb_000360_010--Hb_003905_030 Hb_000360_010--Hb_106552_030 Hb_000360_010--Hb_000359_070 Hb_000360_010--Hb_010080_070 Hb_006816_040--Hb_156850_020 Hb_006816_040--Hb_000359_070 Hb_006816_040--Hb_000360_010 Hb_006816_040--Hb_012940_020 Hb_007595_050 Hb_007595_050 Hb_006816_040--Hb_007595_050 Hb_001517_060 Hb_001517_060 Hb_010080_070--Hb_001517_060 Hb_000009_470 Hb_000009_470 Hb_010080_070--Hb_000009_470 Hb_000992_090 Hb_000992_090 Hb_010080_070--Hb_000992_090 Hb_010080_070--Hb_106552_030 Hb_000107_540 Hb_000107_540 Hb_010080_070--Hb_000107_540 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_000029_330 Hb_000029_330 Hb_002835_090--Hb_000029_330 Hb_002835_090--Hb_000359_070 Hb_002835_090--Hb_007595_050 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16759 5.68321 18.9785 9.32441 2.17877 1.55771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.79365 1.14769 2.179 3.30895 85.0394

CAGE analysis